Overview

README.driver
README.environment

Driving AFNI
   afni -com
   plugout_drive
   AFNI environment variables
Driving SUMA
   DriveSuma

@DriveAfni
@DriveSuma
@DO.examples

@chauffeur_afni
@chauffeur_afni -ulay anat+orig -olay func_slim+orig'[2]'  \
   -cbar Plasma -func_range 3 -thr_olay_p2stat 0.001       \
   -set_subbricks -1 1 2 -opacity 4 -prefix STAT_MAP       \
   -montx 5 -monty 3 -set_xhairs OFF -label_mode 1         \
   -label_size 3 -do_clean
aiv *.png

@djunct_4d_imager

@ss_review_basic
@ss_review_driver

@snapshot_volreg
    @snapshot_volreg anat+orig. epi_r1+orig. testsnapshot
@AddEdge
   @AddEdge epi_r1+orig. strip+orig
   @AddEdge -single_edge 

Advanced
Advanced Visualizations
   Clusters, volumes, graphs
suma montages 
   https://github.com/djangraw/FelixScripts/blob/master/PRJ16_TaskFcManipulation/Scripts/fMRI/MakeSumaMontage.tcsh
clusters in 3D
   IsoSurface -isorois+dsets -o clusttest.gii -input Clust_mask+orig
   suma -onestate -i *.gii -vol strip+orig. -sv anat+orig

   3dTstat -mean -prefix epi_r1_mean epi_r1+origsuma_epi_demean_movie.mpg
   3dcalc -a epi_r1+orig. -b epi_r1_mean+orig. -expr 'min(200, 100*a/b)-100' -prefix epi_demeaned
   totem suma_epi_demean_movie.mpg

ECOG
DeepPhrenology