# ======================================================================
# ==                            video #1                              ==
# ======================================================================
cd
ls
afni_open afni_handouts/afni05_regression.pdf

cd AFNI_data6/afni
ls
afni

3dinfo epi_r1+orig

# ======================================================================
# ==                            video #2                              ==
# ======================================================================
3dinfo -VERB epi_r1+orig
# to exit "less", use 'q' to quit
3dinfo -VERB epi_r1+orig | less

cat rall_regress
3dinfo rall_vr+orig

cat stim_AV1_vis.txt
cat stim_AV2_aud.txt

3dDeconvolve -hweb


# ======================================================================
# ==                            video #3                              ==
# ======================================================================
cat rall_regress

# side task: add spaces after a backslash
afni_open -e rall_regress
file_tool -test -infile rall_regress
# and remove the bad spaces after the backslash so that file_tool is happy


cat rall_regress
3dinfo rall_vr+orig

afni_open -e motion.1D
1dplot -volreg -sepscl motion.1D &

cat stim_AV1_vis.txt
cat stim_AV2_aud.txt

timing_tool.py -hweb
timing_tool.py -help_basis

   # copy and paste the 3dDeconvolve and 1dplot commands
   # from the end of the "timing_tool.py -help_basis" output
   3dDeconvolve -nodata 200 0.1 -polort -1 -num_stimts 4      \
      -stim_times 1 '1D:0' GAM                                \
      -stim_times 2 '1D:0' 'WAV(1,1,3,8,0.2,2)'               \
      -stim_times 3 '1D:0' 'BLOCK(1)'                         \
      -stim_times 4 '1D:0' SPMG3                              \
      -x1D X.xmat.1D -x1D_stop
   1dplot -sepscl X.xmat.1D &

1dplot -volreg -sepscl motion.1D &

#       *** main 3dDeconvolve command ***
#           video #3 @ 30:35
tcsh rall_regress

ls -ltr
aiv rall_X.jpg
1dplot -sepscl rall_X.xmat.1D &
1dplot -volreg -sepscl motion.1D &


# ======================================================================
# ==                            video #4                              ==
# ======================================================================

# backing up...
cd
cd AFNI_data6/afni
ls

cat rall_regress
1dplot -sepscl rall_X.xmat.1D &
1dplot -sepscl rall_X.xmat.1D'[6,7] &

afni

3dinfo rall_vr+orig

# double plot fitts over rall_vr+orig @ time = 11:00

3dinfo -VERB rall_func+orig