afni_proc.py single subject report

subj: sub-000.affine

task: task_name


media/qc_00_vorig_EPI.axi.jpg
media/qc_00_vorig_EPI.sag.jpg
media/qc_01_vorig_EPI_variance.axi.jpg
media/qc_01_vorig_EPI_variance.sag.jpg
media/qc_02_vorig_anat.axi.jpg
media/qc_02_vorig_anat.sag.jpg
media/qc_03_vorig_olap.sag.jpg

media/qc_04_ve2a_epi2anat.axi.jpg
media/qc_04_ve2a_epi2anat.sag.jpg

media/qc_05_va2t_anat2temp.axi.jpg
media/qc_05_va2t_anat2temp.sag.jpg
media/qc_06_va2t_mask2final.axi.jpg
media/qc_06_va2t_mask2final.sag.jpg

media/qc_07_vstat_Full_Fstat.axi.jpg
media/qc_07_vstat_Full_Fstat.sag.jpg
media/qc_08_vstat_vis_0_Coef.axi.jpg
media/qc_08_vstat_vis_0_Coef.sag.jpg
media/qc_09_vstat_aud_0_Coef.axi.jpg
media/qc_09_vstat_aud_0_Coef.sag.jpg
media/qc_10_vstat_V-A_GLT_0_Coef.axi.jpg
media/qc_10_vstat_V-A_GLT_0_Coef.sag.jpg
media/qc_11_vstat_mean.VA_GLT_0_Coef.axi.jpg
media/qc_11_vstat_mean.VA_GLT_0_Coef.sag.jpg

media/qc_12_mot_enormoutlr.jpg
media/qc_13_mot_VR6.jpg
media/qc_14_mot_grayplot.jpg

media/qc_15_regr_ideal.jpg
media/qc_16_regr_stims.jpg

initial DF                   : 450 : 100.0%

DF used for regs of interest :   2 :   0.4%
DF used for censoring        :   6 :   1.3%
DF used for polort           :  12 :   2.7%
DF used for motion           :  18 :   4.0%
total DF used                :  38 :   8.4%

final DF                     : 412 :  91.6%

media/qc_18_regr_corr_errts.axi.jpg
media/qc_18_regr_corr_errts.sag.jpg
media/qc_19_regr_tsnr_vreg.axi.jpg
media/qc_19_regr_tsnr_vreg.sag.jpg
media/qc_20_regr_tsnr_fin.axi.jpg
media/qc_20_regr_tsnr_fin.sag.jpg

dset: MNI_2009c_asym (ROI_import_MNI_2009c_asym_resam), Nroi: 12
----------------------------------------------------------------

   ROI   Nvox  Nzer  Dvox   Tmin  T25%  Tmed  T75%  Tmax     X      Y      Z    ROI_name
   ---   ----  ----  ----   ----  ----  ----  ----  ----   -----  -----  -----  --------
    10    448    19   2.2      7    67   124   221   334     5.0   91.8    0.5  SYAF-LH_VisCent_Striate_1
    11   1071    16   2.8     30   141   232   279   434    42.5   16.8   55.5  SYAF-LH_SomMotA_1
    12    794     0   2.4     65   134   177   210   290     7.5  -20.8   33.0  SYAF-LH_SalVentAttnB_PFCmp_1
    13   1337     0   3.0      6    16    34    77   318    15.0  -23.2  -22.0  SYAF-LH_LimbicB_OFC_1
    14   1971  1329   3.0      7    48    71   106   215    27.5   11.8  -29.5  SYAF-LH_LimbicA_TempPole_1
    20    839     0   2.2      8   121   196   234   396   -10.0   66.8   10.5  GHCP-R_Primary_Visual_Cortex
    21    282    25   1.4     42   184   228   266   334    -7.5   34.2   78.0  GHCP-R_Primary_Sensory_Cortex
    22     92     0   1.7    130   181   220   249   311    -5.0  -25.8   28.0  GHCP-R_Anterior_24_prime
    23    342     0   2.2      8    13    17    25    68   -10.0  -35.8  -24.5  GHCP-R_Orbital_Frontal_Complex
    24    660   485   2.2     22    45    70   139   259   -45.0  -15.8  -34.5  GHCP-R_Area_TG_dorsal
    30    180    11   2.2     16    29    44    75   138   -22.5   -0.8  -24.5  JULI-RH_Amygdala
    31     34     0   1.0     60   135   174   198   212    -5.0   -8.2   -4.5  JULI-RH_Accumbens


media/qc_22_radcor_rc_tcat_r01.axi.jpg
media/qc_22_radcor_rc_tcat_r02.axi.jpg
media/qc_22_radcor_rc_tcat_r03.axi.jpg
media/qc_23_radcor_rc_volreg_r01.axi.jpg
media/qc_23_radcor_rc_volreg_r02.axi.jpg
media/qc_23_radcor_rc_volreg_r03.axi.jpg
media/qc_24_radcor_rc_regress_d02.axi.jpg

mild

Warnings regarding Correlation Matrix: X.xmat.1D severity correlation cosine regressor pair -------- ----------- ------ ---------------------------------------- medium: -0.612 0.000 (12 vs. 13) vis#0 vs. aud#0

none

Censored 6 of 450 total time points : 1.3%

none

Max indiv stim censoring fraction : 2.5% -------------------------------------------- Censored 6 of 240 TRs of 'vis#0' stim : 2.5% Censored 0 of 239 TRs of 'aud#0' stim : 0.0%

none

none

none

flip guess cost func original val flipped val ---------- --------- ------------ ----------- NO_FLIP lpc+ZZ -0.23123 -0.07953
media/qc_30_warns_flip_0.axi.jpg
media/qc_30_warns_flip_1.axi.jpg

medium

Lines per run : 3 3 3 Intersecting : 2 Coordinates (see images of the first 7, below, check locations with InstaCorr) ------------------------------------------------------------------------------ Intersecting all r01 r02 ... ----------------------- ----------------------- ----------------------- 0.10 -45.80 30.35 -2.70 -40.30 30.35 0.10 -45.80 30.35 -41.20 -15.50 30.35 -41.20 -12.80 30.35 -41.20 -15.50 30.35 -8.20 -65.00 30.35 -8.20 -65.00 30.35
media/qc_31_warns_vlines_0.sag.jpg


subject ID                : sub-000.affine
AFNI version              : AFNI_25.2.16
AFNI package              : linux_ubuntu_16_64
TR                        : 2.0
TRs removed (per run)     : 2
multiband level           : 1
slice timing pattern      : alt+z
num stim classes provided : 2
final anatomy dset        : anat_final.sub-000.affine+tlrc.HEAD
final stats dset          : stats.sub-000.affine+tlrc.HEAD
orig voxel counts         : 80	80	33
orig voxel resolution     : 2.750000	2.750000	3.000000
orig volume center        : -4.037201	-14.153702	30.349419
final voxel resolution    : 2.500000	2.500000	2.500000

motion limit              : 0.3
num TRs above mot limit   : 3
average motion (per TR)   : 0.0755233
average censored motion   : 0.0691518
max motion displacement   : 1.66201
max censored displacement : 1.02929
outlier limit             : 0.05
average outlier frac (TR) : 0.00276734
num TRs above out limit   : 2
flip guess                : NO_FLIP

num runs found            : 3
num TRs per run           : 150 150 150
num TRs per run (applied) : 146 148 150
num TRs per run (censored): 4 2 0
fraction censored per run : 0.0266667 0.0133333 0
TRs total (uncensored)    : 450
TRs total                 : 444
degrees of freedom used   : 32
degrees of freedom left   : 412
final DF fraction         : 0.915556

TRs censored              : 6
censor fraction           : 0.013333
num regs of interest      : 2
num TRs per stim (orig)   : 240 239
num TRs censored per stim : 6 0
fraction TRs censored     : 0.025 0.000
ave mot per sresp (orig)  : 0.078370 0.071256
ave mot per sresp (cens)  : 0.066435 0.071256

TSNR average              : 213.261
global correlation (GCOR) : 0.0555601
anat/EPI mask Dice coef   : 0.848142
anat/templ mask Dice coef : 0.9725
maximum F-stat (masked)   : 971.756
blur estimates (ACF)      : 0.722993 3.22085 11.7767
blur estimates (FWHM)     : 0 0 0