title          :: Start to Finish Hands-On (3/17): peruse inputs
presentation   :: afni16_start_to_finish.pdf
scripts        :: shell_commands.txt
date           :: 2020-04
duration       :: 28:13
speaker        :: Reynolds
outline        ::
Look at directory contents, starting under AFNI_data6/FT_analysis
Note that afni_proc.py in s05.ap.uber generates the s15 proc script
Have tutorial under tutorial directory
Review original (input) analysis data under FT directory
+ anat looks okay, EPI looks okay, EPI time series looks good
+ EPI overlaid on anat shows approximately same location
Think about magnitude of EPI values (over 1000 is good, 500- is bad)
Review stim timing and manipulation of timing files
timing_tool.py -hweb
timing_tool.py -multi_timing AV*.txt -stim_dur 20 -show_events
Review afni_proc.py command in s05.ap.uber
Create copied version to edit: s05.ap.uber.pythonic
+ to command, add -compare_opts 'example 6b' -verb 2
+ run (tcsh s05.ap.uber.pythonic) to show comparison against help Example 6b
See how to compare 2 personal afni_proc.py commands: see compare.s05.vs.NL
+ by applying -compare_opts_vs_opts
In s05.ap.uber.pythonic in editor:
+ undo -compare_opts line
+ add "-html_review_style pythonic" (if appropriate for your computer)