#################################
## boot camp Jan 2025
## dataTable examples
## copy and paste only (don't execute the whole file...)

####################
## good one 

## look at a good dataTable (or just open with excel...)
open ../data_dataTables/00_test1_good_5x5x5.tsv

## run good example
./00_test1_good_5x5x5.sh

## check log
cat ../results/00_test1_good_5x5x5_MVM_log.txt

####################
## bad ones 

## missing some entries in the dataTable file
./01_test1_bad_not_rect_5x5x5.sh
open ../data_dataTables/01_test1_bad_not_rect_5x5x5.tsv

## some files missing or names are wrong
./02_test1_bad_file_5x5x5.sh
open ../data_dataTables/02_test1_bad_file_5x5x5.tsv

## some files are on a different grid
./03_test1_bad_grid_5x5x5.sh
open ../data_dataTables/03_test1_bad_grid_5x5x5.tsv
3dinfo ../subjects_5x5x5/sub-0010.rest.cg25.1mm.nii.gz
3dinfo ../subjects_5x5x5/subj-0046.rest.cg25.3mm.5x5x5.nii.gz

## spelling counts
./04_test1_bad_InputFile_misspelled_5x5x5.sh

## can't have multiple volumes selected
./05_test1_bad_multi_vol_grid_5x5x5.sh
3dinfo ../subjects_5x5x5/sub-0011.rest.cg25.3mm.5x5x5.multi_vol.nii.gz
open ../data_dataTables/05_test1_bad_multi_vol_grid_5x5x5.tsv

## no duplicate input files
./06_test1_bad_dup_InputFiles_5x5x5.sh
open ../data_dataTables/06_test1_bad_dup_InputFiles_5x5x5.tsv

## warnings on dataTable variables
./07_test1_good_warnings_5x5x5.sh
cat ../results/07_test1_good_warnings_5x5x5_MVM_log.txt
open ../data_dataTables/07_test1_good_warnings_5x5x5.tsv

## within subject model warning
./08_test2_warn_files_per_subj_5x5x5.sh
cat ../results/08_test2_warn_files_per_subj_MVM_5x5x5_log.txt
open ../data_dataTables/08_test2_warn_files_per_subj_5x5x5.tsv