12 Apr 2024 [rickr]: 3drefit -newid FT/SUMA/FT_SurfVol.nii 20 Mar 2024 [rickr]: add regress block to -radial_correlate_blocks 18 Oct 2023 [gangc]: redo 0.BGA as 1.bga and update run.MSS.txt 12 Oct 2023 [rickr]: regenerate FT_analysis/results.QC trees 12 Oct 2023 [gangc]: redo GroupAna_cases tree: dirs, scripts, data 27 Sep 2023 [rickr]: GroupAna_cases, afni_proc.py, template - improve some of the formatting of GroupAna_cases files - FT_analysis/s05 scripts: changed 2009c to 2009_template - re-generate FT_analysis/s1* scripts (from s0*) 31 Jul 2023 [gangc]: removed -mvE4 option from 3dMVM commands 16 May 2023 [rickr]: renamed GroupAna_cases scripts and output 23 Nov 2022 [rickr]: s05: added align_unifize_epi local 12 Apr 2022 [rickr]: changed s05 html_review_style to pythonic 10 Jan 2022 [rickr]: renamed PPI/README.txt to PPI/README_main.tcsh 20 Feb 2020 [rickr]: updated FT_analysis examples - added s[01]* analysis and compare* scripts - added results.QC_FT.05.NL and results.QC_FT.rest.11 QC dirs - updated FT/SUMA and Qwarp trees 23 Jan 2020 [rickr]: added demo_3_ROIs_n_data 30 Dec 2019 [rickr]: updated s07/s17 for erode 28 Oct 2019 [ptaylor]: updated FT_analysis/results.QC_FT.05 24 May 2019 [ptaylor]: updated FT_analysis/results.QC_FT.05 29 Apr 2019 [rickr]: added afni/AV_r1.make_reg.tcsh 15 Mar 2019 [ptaylor]: added FT_analysis/results.QC_FT.05 tree 20 Dec 2018 [rickr]: slight mod to @stim_analyze_modern 21 Nov 2018 [rwcox]: added FT_analysis/Qwarp tree 17 Oct 2018 [rickr]: re-add FT_white.nii, FT_vent.nii 12 Oct 2018 [rickr/ptaylor]: updated FT/SUMA with current FreeSurfer 6 output 12 Oct 2018 [ptaylor]: updated 0.BGA scripts 29 Jun 2018 [gangc]: added 0.BGA and updated 2.3groups 05 Jun 2018 [rickr]: minor updates to FT_analysis scripts 09 May 2018 [rickr]: added ht03/@stim_analyze_modern 09 Jan 2018 [rickr]: added results.clustsim.05 to replace s05 clustsim 10 Oct 2017 [rickr]: updated FT_analysis scripts for local execution 24 Aug 2017 [rickr]: PPI scripts are now based on FT_analysis/s05.ap.uber 18 Jul 2017 [rickr]: added mask.auto.nii.gz to afni dir 06 May 2017 [rickr]: fixed rstart in cmd.ppi.2.make.regs for diff run lens 06 Mar 2017 [rickr]: updated FT_white.nii w/out 16 (brain stem) 30 Dec 2016 [rickr]: applied updated FS reordering - removed FT_analysis/FT/SUMA/*rank* - ran do_suma_fs_renum.tcsh to create new segmentation datasets 26 Oct 2016 [rickr]: updated FT_analysis/s06,s16 - removed CSFe 03 Oct 2016 [rickr]: removed _rank from s07.ap.rest.11 22 Aug 2016 [rickr]: updated proc scripts and PPI examples - added PPI/run.ppi.example.txt, ppi.sample.dir - updated FT_analysis/s1* by re-running s0* with current afni_proc.py 29 Mar 2016 [rickr]: s4.3dMEMA.V-A is no longer valid 01 Mar 2016 [rickr]: regenerated ClustSim tables in func_slim+orig 19 Jan 2016 [rickr]: added group_results/s7.3dANOVA3 16 Oct 2015 [rickr]: added FT_analysis/PPI directory, with PPI scripts 10 Sep 2015 [rickr]: updated FT_analysis tree - created modern FT/SUMA directory - updated s03.ap.surface and corresponding s13.proc.FT.surf - updated s05.ap.uber and corresponding s15.proc.FT.uber (renamed s15.proc.FT to s15.proc.FT.uber) - added s06.ap.rest, s07.ap.rest.11, s16.proc.FT.rest, s17.proc.FT.rest.11 24 Aug 2015 [rickr]: FT_analysis/s04.cmd.usubj now processes data 21 Apr 2015 [rickr]: updated FT_analysis/s1* proc scripts - s11.proc.FT, s12.proc.FT.align, s13.proc.FT.surf, s15.proc.FT 19 Mar 2015 [rickr]: enhanced unix_tutorial 10 Feb 2015 [rickr]: added scripts group_results/s[56].ttest.* 22 Sep 2014 [gangc]: updates to GroupAna_cases 29 Jul 2014 [rickr]: fixed line continuation in quick.s1.afni_proc 21 May 2014 [gangc]: changes to GroupAna_cases tree 14 May 2014 [gangc]: added GroupAna_cases tree 01 Nov 2013 [rickr]: updated FT_analysis scripts - command scripts: s04.cmd.usubj and s05.ap.uber - added: s11.proc.FT, s12.proc.FT.align, s13.proc.FT.surf, s15.proc.FT 30 Sep 2013 [rickr]: unix_tutorial updates, including using suma for &/bg 13 Feb 2013 [rickr]: - added unix_tutorial directory, including index.html and sub-dirs basic_unix and misc - updated the FT_analysis/s1* proc scripts with current afni_proc.py 15 Jan 2013 [rickr]: - added afni/mask.left.vis.aud+orig - created realtime.demos and demo.2.fback.* - mv demo.realtime.run1 realtime.demos/demo.1.run1 data generously donated from: Nath, A.R., Beauchamp, M.S., 2011. Dynamic changes in superior temporal sulcus connectivity during perception of noisy audiovisual speech. J. Neurosci. 31 (5), 1704–1714