This tree is an updated form of AFNI_data6. do_01_gtkyd.tcsh - script : getting to know your data do_12_fs.tcsh - script : FS's recon-all (was run) do_13_ssw.tcsh - script : skullstrip and warp anat (was run) do_14_timing.tcsh - script : convert TSV to AFNI timing (was run) do_20_ap_simple.tcsh - script : ap_run_simple_rest.tcsh command do_21_ap_affine.tcsh - script : affine (faster) afni_proc.py do_22_ap_nonlinear.tcsh - script : better NL registration version example_snapshots - dir : images from specific operations save.proc.sub-000.affine - script : proc from do_21_ap_affine.tcsh sub-000 - dir : BIDS subject data tree SSW - dir : sswarper2 results SUMA - dir : FreeSurfer