afni_proc.py single subject report

subj: sub-001

task: task_name


media/qc_00_vorig_EPI.axi.jpg
media/qc_00_vorig_EPI.sag.jpg
media/qc_01_vorig_anat.axi.jpg
media/qc_01_vorig_anat.sag.jpg
media/qc_02_vorig_olap.sag.jpg
media/qc_02_vorig_olap.sag_DEOB.jpg

media/qc_03_ve2a_epi2anat.axi.jpg
media/qc_03_ve2a_epi2anat.sag.jpg

media/qc_04_va2t_anat2temp.axi.jpg
media/qc_04_va2t_anat2temp.sag.jpg
media/qc_05_va2t_mask2final.axi.jpg
media/qc_05_va2t_mask2final.sag.jpg

media/qc_06_vstat_Full_Fstat.axi.jpg
media/qc_06_vstat_Full_Fstat.sag.jpg
media/qc_07_vstat_CONTROL_0_Coef.axi.jpg
media/qc_07_vstat_CONTROL_0_Coef.sag.jpg
media/qc_08_vstat_TASK_0_Coef.axi.jpg
media/qc_08_vstat_TASK_0_Coef.sag.jpg
media/qc_09_vstat_T-C_0_Coef.axi.jpg
media/qc_09_vstat_T-C_0_Coef.sag.jpg
media/qc_10_vstat_meanTC_0_Coef.axi.jpg
media/qc_10_vstat_meanTC_0_Coef.sag.jpg

media/qc_11_mot_enormoutlr.jpg
media/qc_12_mot_VR6.jpg
media/qc_13_mot_grayplot.jpg

media/qc_14_regr_ideal.jpg
media/qc_15_regr_stims.jpg

initial DF                   : 242 : 100.0%

DF used for regs of interest :   2 :   0.8%
DF used for censoring        :   2 :   0.8%
DF used for polort           :   5 :   2.1%
DF used for motion           :   6 :   2.5%
total DF used                :  15 :   6.2%

final DF                     : 227 :  93.8%

media/qc_17_regr_corr_errts.axi.jpg
media/qc_17_regr_corr_errts.sag.jpg
media/qc_18_regr_tsnr_vreg.axi.jpg
media/qc_18_regr_tsnr_vreg.sag.jpg
media/qc_19_regr_tsnr_fin.axi.jpg
media/qc_19_regr_tsnr_fin.sag.jpg

dset: MNI (ROI_import_MNI_resam), Nroi: 12
------------------------------------------

   ROI   Nvox  Nzer  Dvox   Tmin  T25%  Tmed  T75%  Tmax     X      Y      Z    ROI_name
   ---   ----  ----  ----   ----  ----  ----  ----  ----   -----  -----  -----  --------
    10    252     0   1.7      4   127   163   206   305     4.5   91.5    1.5  SYAF-LH_VisCent_Striate_1
    11    602     0   2.2      2   164   214   255   424    43.5   19.5   58.5  SYAF-LH_SomMotA_1
    12    465     0   2.2     79   211   240   267   363     7.5  -13.5   37.5  SYAF-LH_SalVentAttnB_PFCmp_1
    13    786     0   2.8      0     9    18    40   201     7.5  -16.5  -19.5  SYAF-LH_LimbicB_OFC_1
    14   1142     0   2.4      1    16    49   151   280    22.5    7.5  -28.5  SYAF-LH_LimbicA_TempPole_1
    20    499     0   2.0     10   147   189   234   350   -10.5   82.5    7.5  GHCP-R_Primary_Visual_Cortex
    21    161     0   1.0    100   208   253   288   432   -13.5   31.5   82.5  GHCP-R_Primary_Sensory_Cortex
    22     58     0   1.7    178   198   212   233   265    -4.5  -22.5   31.5  GHCP-R_Anterior_24_prime
    23    194     0   2.0      1     8    15    24   125   -10.5  -25.5  -22.5  GHCP-R_Orbital_Frontal_Complex
    24    384     0   2.2      1    16    27    48   194   -40.5  -19.5  -31.5  GHCP-R_Area_TG_dorsal
    30    107     0   1.7     14    76   125   157   224   -25.5    1.5  -19.5  JULI-RH_Amygdala
    31     20     0   1.0     30    98   124   144   173    -4.5  -10.5   -4.5  JULI-RH_Accumbens


media/qc_21_radcor_rc_tcat_r01.axi.jpg
media/qc_22_radcor_rc_volreg_r01.axi.jpg

mild

Warnings regarding Correlation Matrix: X.xmat.1D severity correlation cosine regressor pair -------- ----------- ------ ---------------------------------------- medium: -0.406 0.139 ( 5 vs. 6) CONTROL#0 vs. TASK#0

none

Censored 2 of 242 total time points : 0.8%

none

Max indiv stim censoring fraction : 1.5% -------------------------------------------- Censored 2 of 136 TRs of 'CONTROL#0' stim : 1.5% Censored 2 of 213 TRs of 'TASK#0 ' stim : 0.9%

none

none

none

flip guess cost func original val flipped val ---------- --------- ------------ ----------- NO_FLIP lpc+ZZ -0.20172 -0.07136
media/qc_28_warns_flip_0.axi.jpg
media/qc_28_warns_flip_1.axi.jpg

none

No lines found


subject ID                : sub-001
AFNI version              : AFNI_24.1.22
AFNI package              : linux_rocky_8
TR                        : 2.0
TRs removed (per run)     : 0
multiband level           : 1
slice timing pattern      : simult
num stim classes provided : 2
final anatomy dset        : anat_final.sub-001+tlrc.HEAD
final stats dset          : stats.sub-001_REML+tlrc.HEAD
orig voxel counts         : 64	64	34
orig voxel resolution     : 3.000000	3.000000	4.000000
orig volume center        : -5.882599	-32.988724	-12.937347
final voxel resolution    : 3.000000	3.000000	3.000000

motion limit              : 0.3
num TRs above mot limit   : 1
average motion (per TR)   : 0.0435522
average censored motion   : 0.0410824
max motion displacement   : 1.01305
max censored displacement : 0.974766
outlier limit             : 0.05
average outlier frac (TR) : 0.00113016
num TRs above out limit   : 1
flip guess                : NO_FLIP

num runs found            : 1
num TRs per run           : 242
num TRs per run (applied) : 240
num TRs per run (censored): 2
fraction censored per run : 0.00826446
TRs total (uncensored)    : 242
TRs total                 : 240
degrees of freedom used   : 13
degrees of freedom left   : 227
final DF fraction         : 0.938017

TRs censored              : 2
censor fraction           : 0.008264
num regs of interest      : 2
num TRs per stim (orig)   : 136 213
num TRs censored per stim : 2 2
fraction TRs censored     : 0.015 0.009
ave mot per sresp (orig)  : 0.050497 0.043995
ave mot per sresp (cens)  : 0.046196 0.041202

TSNR average              : 216.002
global correlation (GCOR) : 0.0747075
anat/EPI mask Dice coef   : 0.919508
anat/templ mask Dice coef : 0.980381
maximum F-stat (masked)   : 82.2679
blur estimates (ACF)      : 0.69414 3.88607 12.5498
blur estimates (FWHM)     : 0 0 0