++ have nslices : 34
++ copying pb00.sub-001.r01.tcat+orig.HEAD[0..$] to ts.0.orig.r01.nii.gz
++ 3dTcat: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ elapsed time = 6.4 s
++ creating automask from first dset
++ 3dAutomask: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ Authored by: Emperor Zhark
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/ts.0.orig.r01.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/ts.0.orig.r01.nii.gz is 27.999996 degrees from plumb.
++ Loading dataset ts.0.orig.r01.nii.gz
++ Forming automask
 + Fixed clip level = 400.905701
 + Used gradual clip level = 357.826691 .. 487.532562
 + Number voxels above clip level = 32584
 + Clustering voxels ...
 + Largest cluster has 32041 voxels
 + Clustering voxels ...
 + Largest cluster has 31620 voxels
 + Filled   350 voxels in small holes; now have 31970 voxels
 + Filled     1 voxels in large holes; now have 31971 voxels
 + Clustering voxels ...
 + Largest cluster has 31969 voxels
 + Clustering non-brain voxels ...
 + Clustering voxels ...
 + Largest cluster has 107295 voxels
 + Mask now has 31969 voxels
++ 31969 voxels in the mask [out of 139264: 22.96%]
++ first  13 x-planes are zero [from R]
++ last   10 x-planes are zero [from L]
++ first   5 y-planes are zero [from P]
++ last    6 y-planes are zero [from A]
++ first   0 z-planes are zero [from I]
++ last    3 z-planes are zero [from S]
++ Output dataset ./mask.nii.gz
++ CPU time = 0.000000 sec

-- will apply mask mask.nii.gz
++ eroding mask.nii.gz by 2 voxels
++ no -frac option: defaulting to -union
++ processing 1 input dataset(s), NN=2...
++ padding all datasets by 0 (for dilations)
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/tmp.mask.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/tmp.mask.nii.gz is 27.999996 degrees from plumb.
++ have 1 volumes of input to combine
++ frac 0 over 1 volumes gives min count 0
++ voxel limits: 0 clipped, 18622 survived, 120642 were zero
++ writing result mask.nii.gz...
++ Output dataset ./mask.nii.gz

++ requiring 5 voxels in mask columns
++ 3dLocalstat: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ Authored by: Emperor Zhark
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/mask.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/mask.nii.gz is 27.999996 degrees from plumb.
++ Number of voxels in mask = 18622
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/mask.nii.gz is 27.999996 degrees from plumb.
++ Neighborhood comprises 69 voxels
++ Start sub-brick [0]
++ Output dataset ./tmp.mask.col.count.nii.gz
++ 3dcalc: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ Authored by: A cast of thousands
++ Output dataset ./mask.nii.gz

-- detrend -polort 4, new eset = ts.1.det.r01.nii.gz
++ 3dTproject: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ Authored by: Cox the Algebraic (Linear)
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/ts.0.orig.r01.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/ts.0.orig.r01.nii.gz is 27.999996 degrees from plumb.
++ Setting up regressors
++ 1 Blocks * 5 polynomials -- 5 polort regressors
++ 242 retained time points MINUS 5 regressors ==> 237 D.O.F. left
++ no -mask option ==> processing all 139264 voxels in dataset
[7m*+ WARNING:[0m 3dTproject input data :: 2176 vectors are constant

++ 3dTstat: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ Authored by: KR Hammett & RW Cox
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/ts.1.det.r01.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/ts.1.det.r01.nii.gz is 27.999996 degrees from plumb.
++ Output dataset ./tmp.stdev.nii.gz
++ 3dcalc: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ Authored by: A cast of thousands
++ Output dataset ./var.0.orig.r01.nii.gz
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/mask.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/mask.nii.gz is 27.999996 degrees from plumb.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/var.0.orig.r01.nii.gz is 27.999996 degrees from plumb.
++ 3dcalc: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ Authored by: A cast of thousands
++ Output dataset ./var.1.scale.r01.nii.gz
++ 3dLocalstat: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ Authored by: Emperor Zhark
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/mask.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/mask.nii.gz is 27.999996 degrees from plumb.
++ Number of voxels in mask = 18406
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/var.1.scale.r01.nii.gz is 27.999996 degrees from plumb.
++ Neighborhood comprises 69 voxels
++ Start sub-brick [0]
++ Output dataset ./proj.r01.nii.gz
++ Neighborhood definition (NN=3) accepted
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/proj.r01.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/proj.r01.nii.gz is 27.999996 degrees from plumb.
++ User input stat threshold: -1
++ User input stat threshold: 0.95
++ Data volume:      [0] 'MEAN'
++ Threshold volume: [0] 'MEAN'
++ How many sides to this stat? 0
++ Looks like clustering is *not* being performed on a stat value; won't worry about sidedness, then.
++ Opt code: 2sided,-1,0.95,NN3
[7m*+ WARNING:[0m No mask being used? That *could* be OK, but thought I'd let you know...
++ Threshold volume [0] does *not* appear to be a stat!
[7m*+ WARNING:[0m No clusters found!
#** NO CLUSTERS FOUND ***

-- evaluating intersection...
++ 3dMean: AFNI version=AFNI_24.1.22 (Jun 21 2024) [64-bit]
++ WARNING: Have only 1 dset.
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/proj.r01.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/proj.r01.nii.gz is 27.999996 degrees from plumb.
++ Neighborhood definition (NN=3) accepted
[7m*+ WARNING:[0m   If you are performing spatial transformations on an oblique dset,
  such as /lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/proj.min.nii.gz,
  or viewing/combining it with volumes of differing obliquity,
  you should consider running: 
     3dWarp -deoblique 
  on this and  other oblique datasets in the same session.
 See 3dWarp -help for details.
++ Oblique dataset:/lscratch/30511553/sub-001/sub-001.results/vlines.pb00.tcat/proj.min.nii.gz is 27.999996 degrees from plumb.
++ User input stat threshold: -1
++ User input stat threshold: 0.95
++ Data volume:      [0] 'MEAN'
++ Threshold volume: [0] 'MEAN'
++ How many sides to this stat? 0
++ Looks like clustering is *not* being performed on a stat value; won't worry about sidedness, then.
++ Opt code: 2sided,-1,0.95,NN3
[7m*+ WARNING:[0m No mask being used? That *could* be OK, but thought I'd let you know...
++ Threshold volume [0] does *not* appear to be a stat!
[7m*+ WARNING:[0m No clusters found!
#** NO CLUSTERS FOUND ***
++ Check about making images
++ have do_clean, removing time series...


== found questionable regions across inputs: 0
   found questionable intersected regions  : 0

=============== bad_coords.inter.txt ===============

=============== bad_coords.r01.txt ===============

