afni_proc.py single subject report

subj: sub-005

task: task_name


media/qc_00_vorig_EPI.axi.jpg
media/qc_00_vorig_EPI.sag.jpg
media/qc_01_vorig_anat.axi.jpg
media/qc_01_vorig_anat.sag.jpg
media/qc_02_vorig_olap.sag.jpg
media/qc_02_vorig_olap.sag_DEOB.jpg

media/qc_03_ve2a_epi2anat.axi.jpg
media/qc_03_ve2a_epi2anat.sag.jpg

media/qc_04_va2t_anat2temp.axi.jpg
media/qc_04_va2t_anat2temp.sag.jpg
media/qc_05_va2t_mask2final.axi.jpg
media/qc_05_va2t_mask2final.sag.jpg

media/qc_06_vstat_Full_Fstat.axi.jpg
media/qc_06_vstat_Full_Fstat.sag.jpg
media/qc_07_vstat_CONTROL_0_Coef.axi.jpg
media/qc_07_vstat_CONTROL_0_Coef.sag.jpg
media/qc_08_vstat_TASK_0_Coef.axi.jpg
media/qc_08_vstat_TASK_0_Coef.sag.jpg
media/qc_09_vstat_T-C_0_Coef.axi.jpg
media/qc_09_vstat_T-C_0_Coef.sag.jpg
media/qc_10_vstat_meanTC_0_Coef.axi.jpg
media/qc_10_vstat_meanTC_0_Coef.sag.jpg

media/qc_11_mot_enormoutlr.jpg
media/qc_12_mot_VR6.jpg
media/qc_13_mot_grayplot.jpg

media/qc_14_regr_ideal.jpg
media/qc_15_regr_stims.jpg

initial DF                   : 242 : 100.0%

DF used for regs of interest :   2 :   0.8%
DF used for censoring        :   0 :   0.0%
DF used for polort           :   5 :   2.1%
DF used for motion           :   6 :   2.5%
total DF used                :  13 :   5.4%

final DF                     : 229 :  94.6%

media/qc_17_regr_corr_errts.axi.jpg
media/qc_17_regr_corr_errts.sag.jpg
media/qc_18_regr_tsnr_vreg.axi.jpg
media/qc_18_regr_tsnr_vreg.sag.jpg
media/qc_19_regr_tsnr_fin.axi.jpg
media/qc_19_regr_tsnr_fin.sag.jpg

dset: MNI (ROI_import_MNI_resam), Nroi: 12
------------------------------------------

   ROI   Nvox  Nzer  Dvox   Tmin  T25%  Tmed  T75%  Tmax     X      Y      Z    ROI_name
   ---   ----  ----  ----   ----  ----  ----  ----  ----   -----  -----  -----  --------
    10    252     1   1.7      5    94   130   160   253     4.5   91.5    1.5  SYAF-LH_VisCent_Striate_1
    11    602     0   2.2     14   157   193   228   339    43.5   19.5   58.5  SYAF-LH_SomMotA_1
    12    465     0   2.2     84   167   213   241   377     7.5  -13.5   37.5  SYAF-LH_SalVentAttnB_PFCmp_1
    13    786     0   2.8      0    14    32   122   311     7.5  -16.5  -19.5  SYAF-LH_LimbicB_OFC_1
    14   1142     0   2.4      0    10    28   101   263    22.5    7.5  -28.5  SYAF-LH_LimbicA_TempPole_1
    20    499     0   2.0      3    90   118   149   314   -10.5   82.5    7.5  GHCP-R_Primary_Visual_Cortex
    21    161     0   1.0     74   152   185   216   290   -13.5   31.5   82.5  GHCP-R_Primary_Sensory_Cortex
    22     58     0   1.7    110   171   206   246   311    -4.5  -22.5   31.5  GHCP-R_Anterior_24_prime
    23    194     0   2.0      3    19    30   100   225   -10.5  -25.5  -22.5  GHCP-R_Orbital_Frontal_Complex
    24    384     0   2.2      3    29    85   127   187   -40.5  -19.5  -31.5  GHCP-R_Area_TG_dorsal
    30    107     0   1.7     14   101   142   160   203   -25.5    1.5  -19.5  JULI-RH_Amygdala
    31     20     0   1.0    116   160   170   195   227    -4.5  -10.5   -4.5  JULI-RH_Accumbens


media/qc_21_radcor_rc_tcat_r01.axi.jpg
media/qc_22_radcor_rc_volreg_r01.axi.jpg

none

-- no warnings for correlation matrix (cut = 0.400) --

none

Censored 0 of 242 total time points : 0.0%

none

Max indiv stim censoring fraction : 0.0% -------------------------------------------- Censored 0 of 136 TRs of 'CONTROL#0' stim : 0.0% Censored 0 of 210 TRs of 'TASK#0 ' stim : 0.0%

none

none

none

flip guess cost func original val flipped val ---------- --------- ------------ ----------- NO_FLIP lpc+ZZ -0.22449 -0.05818
media/qc_28_warns_flip_0.axi.jpg
media/qc_28_warns_flip_1.axi.jpg

medium

Lines per run : 2 Coordinates (see images of each, below, check locations with InstaCorr) ----------------------------------------------------------------------- r01 ----------------------- 4.30 17.90 -18.48 -52.70 -90.10 -18.48
media/qc_29_warns_vlines_0.sag.jpg


subject ID                : sub-005
AFNI version              : AFNI_24.1.22
AFNI package              : linux_rocky_8
TR                        : 2.0
TRs removed (per run)     : 0
multiband level           : 1
slice timing pattern      : simult
num stim classes provided : 2
final anatomy dset        : anat_final.sub-005+tlrc.HEAD
final stats dset          : stats.sub-005_REML+tlrc.HEAD
orig voxel counts         : 64	64	34
orig voxel resolution     : 3.000000	3.000000	4.000000
orig volume center        : -3.240097	-43.589813	-18.481873
final voxel resolution    : 3.000000	3.000000	3.000000

motion limit              : 0.3
num TRs above mot limit   : 0
average motion (per TR)   : 0.0629843
average censored motion   : 0.0629843
max motion displacement   : 0.602639
max censored displacement : 0.602639
outlier limit             : 0.05
average outlier frac (TR) : 0.00111273
num TRs above out limit   : 0
flip guess                : NO_FLIP

num runs found            : 1
num TRs per run           : 242
num TRs per run (applied) : 242
num TRs per run (censored): 0
fraction censored per run : 0
TRs total (uncensored)    : 242
TRs total                 : 242
degrees of freedom used   : 13
degrees of freedom left   : 229
final DF fraction         : 0.946281

TRs censored              : 0
censor fraction           : 0.000000
num regs of interest      : 2
num TRs per stim (orig)   : 136 210
num TRs censored per stim : 0 0
fraction TRs censored     : 0.000 0.000
ave mot per sresp (orig)  : 0.059958 0.062760
ave mot per sresp (cens)  : 0.059958 0.062760

TSNR average              : 196.158
global correlation (GCOR) : 0.0658471
anat/EPI mask Dice coef   : 0.915912
anat/templ mask Dice coef : 0.978007
maximum F-stat (masked)   : 35.2149
blur estimates (ACF)      : 0.640505 3.88441 15.2408
blur estimates (FWHM)     : 0 0 0