Process Volume using FreeSurferÕs program,
segment_subject
segment_subject <subject_name>
Class Example:
(from FreeSurfer GUI):
Subject Tools
ˆ
Process Volume
(do this for BOTH hemispheres)
Class Example:
(from Command Line):
cd ../../..
takes you up to
lc_play/
segment_subject
lc_avg
Volume
preprocessing
Segmentation
Tessellation
Inflation
Manual Editing
Re-inflation
Fix topology
Final Surface
Volume/Surface
postprocessing
Cutting &
Flattening
orÉ
recon-all -stage1
-stage2
-nomotioncor
-subjid lc_avg