5) Create FreeSurfer directory tree using
mksubjdirs
(note: be sure to source your
.fs_login
file first)
mksubjdirs
<subject_name>
Class Example:
(from within
lc_play/
directory)
mksubjdirs
lc_avg
Volume
preprocessing
Segmentation
Tessellation
Inflation
Manual Editing
Re-inflation
Fix topology
Final Surface
Volume/Surface
postprocessing
Cutting &
Flattening