AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 29, 2014 02:52AM
Thanks Rick. I've tried to do a little bit more research and have discovered actually quite a few articles about resting-state connectivity in which they plot t-statistic maps instead of mean z-transformed correlations, e.g.
- Greicius et al. 2003 Functional connectivity in the resting brain: a network analysis of the default mode hypothesis; or
- Schwarz et al. 2013 Anti-correlated cortical networks of intrinsic connectivity in the rat brain.

However, I haven't been able to find any methodological discussion of this issue. When plotting the t-statistic map, we basically plot how significantly different from zero the correlation with the seed region time course is. In a way, this captures the notion of a connection between the seed and target regions (or voxels), although I still find the mean z-score more intuitive.

In any case, is there any reason to use one over the other?

-John
Subject Author Posted

Seed correlation analysis in AFNI explained

afniuser July 24, 2014 11:31AM

Re: Seed correlation analysis in AFNI explained

rick reynolds July 25, 2014 08:43AM

Re: Seed correlation analysis in AFNI explained

afniuser July 29, 2014 02:52AM

Re: Seed correlation analysis in AFNI explained

rick reynolds July 29, 2014 10:13AM

Re: Seed correlation analysis in AFNI explained

gang July 29, 2014 10:37AM

Re: Seed correlation analysis in AFNI explained

umeshksingla June 03, 2018 04:24PM