AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 08, 2014 09:51PM
Hi, all- I'm trying to create ROIs based on functional activations by saving clusters w/ pressing "SaveMsk" on the cluster report, but I got the following error:

++ Writing mask dataset ./Clust_mask+tlrc.BRIK
*+ WARNING: Over-writing dataset ./Clust_mask+tlrc.HEAD
*** Datablock write error: Write error in brick file: Is disk full, or write_protected?
+ 3dclust -1Dformat -nosum -1dindex 0 -1tindex 1 -2thresh -3.98 3.98 -dxyz=1 -savemask Clust_mask 1.01 26 /IRCdata/CFP_Dep/CBgroup/GroupAnalysis/CBv2ttest.178.mask.clean+tlrc.HEAD

There shouldn't be any permissions issues, as I created everything in the directory within which I'm working.

I have a subject's normalized mprage as the underlay & results of the group t-test as overlay. Both are oriented RPI. Could orientation be the problem? &, if so, what would be the solution? I ask bc when I was earlier exploring "WamI," I got the following error in my terminal:

++ Running WamI command: [first 20 clusters]
+ /usr/local/afni/whereami -omask ./Clust_mask+tlrc.HEAD
** Can't read ANY data from file './Clust_mask+tlrc.HEAD'
** Error: Failed to open mask set ./Clust_mask+tlrc.HEAD.

& this pop-up at the cluster report:

++ Input coordinates orientation set by default rules to RAI

Any help would be much appreciated! Thanks, -Robie
Subject Author Posted

"SaveMsk" Error

neurobie September 08, 2014 09:51PM

Re: "SaveMsk" Error

rick reynolds September 09, 2014 10:07AM

Re: "SaveMsk" Error

neurobie September 09, 2014 05:03PM

Re: "SaveMsk" Error

rick reynolds September 09, 2014 05:16PM