AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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francescastrappini
March 24, 2015 06:05PM
Thanks to both of you, it worked!

I'm also tryint to import the ROIs I created in the surface with freesurfer using retinotopic data.
I ran this command, and I would like to ask you if is it the right procedure. They originally were aligned with freesurfer anatomy, I don't know if this registration went lost when I imported the surfaces to SUMA.

FSread_annot -input lh.V3ALG.annot -roi_1D lh.V3ALG.1D.roi -hemi lh -col_1D lh.V3ALG.1D.col -FScmap /usr/local/freesurfer/FreeSurferColorLUT.txt

++ Notice FSread_annot (/tmp/buildd/afni-0.20141224~dfsg.1/SUMA/SUMA_FSread_annot.c:303 @23:59:02):
Assuming FS annot version of -1
oo Warning SUMA_readFSannot (/tmp/buildd/afni-0.20141224~dfsg.1/SUMA/SUMA_Surface_IO.c:2475):
Node Color (label) not found in cmap.
Marking with annotation value.
Further occurences will not be reported.

Best
Francesca
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Subject Author Posted

Aligment functional data

francescastrappini March 24, 2015 02:08PM

Re: Aligment functional data

rick reynolds March 24, 2015 03:43PM

Re: Aligment functional data

Daniel Glen March 24, 2015 03:43PM

Re: Aligment functional data

francescastrappini March 24, 2015 06:05PM