Thanks to both of you, it worked!
I'm also tryint to import the ROIs I created in the surface with freesurfer using retinotopic data.
I ran this command, and I would like to ask you if is it the right procedure. They originally were aligned with freesurfer anatomy, I don't know if this registration went lost when I imported the surfaces to SUMA.
FSread_annot -input lh.V3ALG.annot -roi_1D lh.V3ALG.1D.roi -hemi lh -col_1D lh.V3ALG.1D.col -FScmap /usr/local/freesurfer/FreeSurferColorLUT.txt
++ Notice FSread_annot (/tmp/buildd/afni-0.20141224~dfsg.1/SUMA/SUMA_FSread_annot.c:303 @23:59:02):
Assuming FS annot version of -1
oo Warning SUMA_readFSannot (/tmp/buildd/afni-0.20141224~dfsg.1/SUMA/SUMA_Surface_IO.c:2475):
Node Color (label) not found in cmap.
Marking with annotation value.
Further occurences will not be reported.
Best
Francesca
