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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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paul.hamilton
May 01, 2015 02:27PM
Hi all (probably Gang, more specifically),

We're playing with 3dLME to look at main effects and interactions between a between subjects factor (two levels) and a within-subjects factor (two levels) while trying to soak up some noise with age as a covariate of no interest.

We're coding it as shown below and getting consistent model test failures with the warning: "Warning message:
In if (!is.na(lop$qVars)) for (ii in rev(levels(ordered(lop$QV)))) showTab <- gsub(paste("\\*", :
the condition has length > 1 and only the first element will be used"

I've tried various debugging steps but to no avail. A little help??

Thanks!

Paul


#!/bin/bash

3dLME -prefix MSQ_MixedMod -jobs 4 \
-model 'group*cond+age' \
-qVars age \
-ranEFF '~1' \
-SS_type 3 \
-dataTable \
Subj group cond age InputFile \
AA683 MDD self_actual_ideal 29 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA683/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AA683 MDD other_actual_ideal 29 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA683/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
AB143 MDD self_actual_ideal 46 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB143/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AB143 MDD other_actual_ideal 46 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB143/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
AB240 MDD self_actual_ideal 44 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB240/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AB240 MDD other_actual_ideal 44 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB240/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
...
AA003 CTL self_actual_ideal 45 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA003/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AA003 CTL other_actual_ideal 45 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA003/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
AA115 CTL self_actual_ideal 45 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA115/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AA115 CTL other_actual_ideal 45 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA115/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
AB052 CTL self_actual_ideal 41 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB052/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AB052 CTL other_actual_ideal 41 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB052/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
...
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Subject Author Posted

3dLME model test failure

paul.hamilton May 01, 2015 02:27PM

Re: 3dLME model test failure

gang May 01, 2015 02:55PM

Re: 3dLME model test failure confused smiley

paul.hamilton May 01, 2015 02:59PM