Hi all (probably Gang, more specifically),
We're playing with 3dLME to look at main effects and interactions between a between subjects factor (two levels) and a within-subjects factor (two levels) while trying to soak up some noise with age as a covariate of no interest.
We're coding it as shown below and getting consistent model test failures with the warning: "Warning message:
In if (!is.na(lop$qVars)) for (ii in rev(levels(ordered(lop$QV)))) showTab <- gsub(paste("\\*", :
the condition has length > 1 and only the first element will be used"
I've tried various debugging steps but to no avail. A little help??
Thanks!
Paul
#!/bin/bash
3dLME -prefix MSQ_MixedMod -jobs 4 \
-model 'group*cond+age' \
-qVars age \
-ranEFF '~1' \
-SS_type 3 \
-dataTable \
Subj group cond age InputFile \
AA683 MDD self_actual_ideal 29 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA683/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AA683 MDD other_actual_ideal 29 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA683/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
AB143 MDD self_actual_ideal 46 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB143/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AB143 MDD other_actual_ideal 46 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB143/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
AB240 MDD self_actual_ideal 44 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB240/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AB240 MDD other_actual_ideal 44 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB240/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
...
AA003 CTL self_actual_ideal 45 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA003/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AA003 CTL other_actual_ideal 45 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA003/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
AA115 CTL self_actual_ideal 45 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA115/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AA115 CTL other_actual_ideal 45 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AA115/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
AB052 CTL self_actual_ideal 41 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB052/MSQ/MSQ.results/stats.MSQ+tlrc'[16]' \
AB052 CTL other_actual_ideal 41 ~/storage/labs/phamilton/LIBR/MADINI/Imaging/Microbiomics/data/AB052/MSQ/MSQ.results/stats.MSQ+tlrc'[7]' \
...
