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Generate a script that the user can run to review the unprocessed EPI data.
Generate a script that the user can run to review the unprocessed EPI data.
- Name the output script @epi_review.$subj.
- Input the pb00 datasets created with 3dTcat at the beginning of the script. That is the original data, except that the first 3 TRs were removed.
- gen_epi_review.py -script @epi_review.$subj \
- -dsets pb00.$subj.r??.tcat+orig.HEAD
Run @epi_review.$subj to simply view the data from each run. The script:
- lanches the afni GUI, and opens image and graph windows
- puts the graph viewer in 'v'ideo mode (scrolling through time)
- shows the current dataset name in the terminal window
- prompts the user to hit “Enter” to switch to the data from the next run
Run the script via either 'tcsh' or by using './' :