AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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noahmarkowitz
July 22, 2015 02:17AM
I've tried running script #9 and #10 with afni_proc.py but I receive some errors.

** 3dAttribute exec failure for "TAXIS_NUMS /Modularity_TestAFNI1/SMART001bfMRI+orig.BRIK"
shell error:
*** Can't open dataset /Modularity_TestAFNI1/SMART001bfMRI+orig.BRIK

** failed to find the number of TRs from dset '/Modularity_TestAFNI1/SMART001bfMRI+orig.BRIK'
----------------------------------------------------------------------
** failed command (create_script):

afni_proc.py -subj_id SMART -dsets \
/Modularity_TestAFNI1/SMART001bfMRI+orig.BRIK -copy_anat \
SMART001bT1.nii -blocks despike tshift align tlrc volreg blur mask \
regress -tcat_remove_first_trs 3 -volreg_align_e2a -volreg_tlrc_warp \
-mask_segment_anat yes -mask_segment_erode yes -regress_censor_motion \
0.2 -regress_censor_outliers 0.1 -regress_bandpass 0.01 0.1 \
-regress_apply_mot_types demean deriv -regress_ROI WMe CSFe \
-regress_run_clustsim no -regress_est_blur_errts
----------------------------------------------------------------------

I'm not using #11 because I don't have any freesurfer data and don't have any masks made. I thought that's what this script did. Any help for this newbie would be appreciated.

-Noah
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Subject Author Posted

Resting State Analysis

noahmarkowitz July 21, 2015 03:21AM

Re: Resting State Analysis

ptaylor July 21, 2015 03:58AM

Re: Resting State Analysis

noahmarkowitz July 21, 2015 07:42AM

Re: Resting State Analysis

rick reynolds July 21, 2015 12:47PM

Re: Resting State Analysis

noahmarkowitz July 22, 2015 02:17AM

Re: Resting State Analysis

ptaylor July 22, 2015 02:39AM

Re: Resting State Analysis

noahmarkowitz July 22, 2015 08:45AM

Re: Resting State Analysis

rick reynolds July 22, 2015 11:45AM

Re: Resting State Analysis

rick reynolds July 22, 2015 01:19PM

Re: Resting State Analysis

rick reynolds July 27, 2015 08:57AM

Re: Resting State Analysis

trabz July 24, 2018 05:11PM

Re: Resting State Analysis

rick reynolds July 26, 2018 11:52AM