AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 24, 2018 05:11PM
Hi Rick,

I tried to use ADHD200 Peking University dataset which is publicly released but i couldn't perform pre-process properly i think and i used uber_subject.py for afni_proc.py script generating i copied the warnings and error from output.proc to here. For other subjects it didn't give any fatal errors. When ı copied your code for censor motion count it gives 83 for 0.2.

43 -*+ WARNING: Input dataset is not 3D+time; assuming TR=1.0
set ovals = ( `1d_tool.py -set_run_lengths $tr_counts
-index_to_run_tr $minindex` )

82-*+ WARNING: dataset is already aligned in time!
83-*+ WARNING: ==>> output dataset is just a copy of input dataset

242-*********** Warning *************
Dataset centers are 42.224525 mm
apart. If registration fails, or if
parts of the original anatomy gets
cropped, try adding option
-init_xform AUTO_CENTER
to your @auto_tlrc command.

++ Processing AFNI dataset __ats_tmp___upad40_dset_ns+orig
308-*+ WARNING: Changing the space of an ORIG view dataset may cause confusion!
309-*+ WARNING: NIFTI copies will be interpreted as TLRC view (not TLRC space).
310-*+ WARNING: Consider changing the view of the dataset to TLRC view also

356-*+ WARNING: input 'a' is not used in the expression


** ERROR: *** Censoring has made regression impossible :( ***
** FATAL ERROR: 3dDeconvolve dies: Insufficient data (148) for estimating 163 parameters
** Program compile date = Jul 6 2018
Subject Author Posted

Resting State Analysis

noahmarkowitz July 21, 2015 03:21AM

Re: Resting State Analysis

ptaylor July 21, 2015 03:58AM

Re: Resting State Analysis

noahmarkowitz July 21, 2015 07:42AM

Re: Resting State Analysis

rick reynolds July 21, 2015 12:47PM

Re: Resting State Analysis

noahmarkowitz July 22, 2015 02:17AM

Re: Resting State Analysis

ptaylor July 22, 2015 02:39AM

Re: Resting State Analysis

noahmarkowitz July 22, 2015 08:45AM

Re: Resting State Analysis

rick reynolds July 22, 2015 11:45AM

Re: Resting State Analysis

rick reynolds July 22, 2015 01:19PM

Re: Resting State Analysis

rick reynolds July 27, 2015 08:57AM

Re: Resting State Analysis

trabz July 24, 2018 05:11PM

Re: Resting State Analysis

rick reynolds July 26, 2018 11:52AM