AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 17, 2012 07:58AM
Please help - how do I fix this problem?

Trying to compile afni for our recently updated linux workstation. Fedora Core 17, 64-bit.

I am using Makefile.linux_gcc33_64

error:
---
/usr/bin/gcc -O2 -m64 -fPIC -DREAD_WRITE_64 -DLINUX2 -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -c gifti_choice.c -Igifti -I. -I/usr/X11R6/include -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
In file included from gifti/gifti_io.c:5:0,
from gifti_choice.c:17:
gifti/gifti_io.h:5:19: fatal error: expat.h: No such file or directory
compilation terminated.
make: *** [gifti_choice.o] Error 1
---
======
expat.h is part of xulrunner. I have xulrunner and xulrunner-devel both installed. Along with all their numerous dependencies

xulrunner-13.0-1.fc17.x86_64
xulrunner-devel-13.0-1.fc17.x86_64
=======
[root@bigfoot xulrunner-2]# ls -l exp*
-rw-r--r--. 1 root root 7369 Jun 1 07:04 expat_config.h
-rw-r--r--. 1 root root 3447 Jun 1 07:04 expat_external.h
-rw-r--r--. 1 root root 40487 Jun 1 07:04 expat.h
[root@bigfoot xulrunner-2]# pwd
/usr/include/xulrunner-2
=======

[root@bigfoot xulrunner-2]# gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.7.0/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --disable-build-with-cxx --disable-build-poststage1-with-cxx --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.7.0 20120507 (Red Hat 4.7.0-5) (GCC)

Please help!

JP
Subject Author Posted

Compile Error

James Patterson June 17, 2012 07:58AM

Re: Compile Error

James Patterson June 17, 2012 04:33PM

Re: Compile Error

ziad June 17, 2012 10:32PM

Re: Compile Error

James Patterson June 18, 2012 07:02AM

Re: Compile Error

rick reynolds June 18, 2012 07:59AM

Re: Compile Error

James Patterson June 18, 2012 12:40PM

Re: Compile Error

rick reynolds June 18, 2012 12:52PM

Re: Compile Error

James Patterson June 19, 2012 06:44AM

Re: Compile Error

James Patterson June 19, 2012 08:57AM

Re: Compile Error

Daniel Glen June 19, 2012 01:48PM

Re: Compile Error

James Patterson June 19, 2012 05:52PM

Re: Compile Error

rick reynolds June 19, 2012 08:53PM

Re: Compile Error

James Patterson June 20, 2012 02:31PM

Re: Compile Error

rick reynolds June 20, 2012 03:07PM

Re: Compile Error

James Patterson June 20, 2012 08:10PM