Well! Making progress. That fix plus a few more miscellanous libraries has me to this point.
It compiled...partly
It runs. The font looks different, coarse. Is this the difference between Lesstif and Openmotif? May have to switch to OpenMotif
Here's where it is failing now - during the SUMA compile. Not sure where to find tracktools?
make -f SUMA_Makefile SurfMesh 'INSTALLDIR=./linux_openmp_64' \
'SUMA_INCLUDE_PATH=-IGLw_local -I. -I/usr/include -I.. -I../niml -Igts/src -I/usr/include/glib-1.2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include' \
'SUMA_LINK_PATH=-L.. -L. -L/usr/lib64' \
'SUMA_LINK_LIB=libGLws.a -lGLU -lGL -lmri -lf2c -lXm -lXt -lXft -lXp -lXpm -lXext -lXmu -lSM -lICE -lX11 -lpng -ljpeg -lz -lexpat -lm -ldl -lc' \
'SUMA_BIN_ARCHIVE=SUMA_Linux.tar' \
'SUMA_GLIB_VER=-2.0' \
'RANLIB=/usr/bin/ranlib' \
'MAKE=make' \
'CC=/usr/bin/gcc -O2 -m64 -fPIC -DREAD_WRITE_64 -DLINUX2 -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -DDONT_USE_XTDESTROY -DUSING_LESSTIF' 'RM=/bin/rm -f' 'CEXTRA=-Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -DDONT_USE_XTDESTROY -DUSING_LESSTIF' 'MV=/bin/mv -f' 'CP=/bin/cp -f' \
'TAR=/bin/tar' 'MKDIR=/bin/mkdir'; \
cd ../ ;)
make[1]: Entering directory `/home/biolpsych/Downloads/afni_src/SUMA'
/usr/bin/gcc -O2 -m64 -fPIC -DREAD_WRITE_64 -DLINUX2 -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -DDONT_USE_XTDESTROY -DUSING_LESSTIF -DSUMA_COMPILED -IGLw_local -I. -I/usr/include -I.. -I../niml -Igts/src -I/usr/include/glib-1.2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -c SUMA_gts.c
rm -f libSUMAGTS.a
ar q libSUMAGTS.a SUMA_gts.o
ar: creating libSUMAGTS.a
echo "library GTS Rebuilt ..."
library GTS Rebuilt ...
/usr/bin/ranlib libSUMAGTS.a
/bin/rm -f SurfMesh
/usr/bin/gcc -O2 -m64 -fPIC -DREAD_WRITE_64 -DLINUX2 -Wcomment -Wformat -DUSE_TRACING -DHAVE_XDBE -DDONT_USE_XTDESTROY -DUSING_LESSTIF -DSUMA_COMPILED \
-o SurfMesh SUMA_coarsen.c \
-IGLw_local -I. -I/usr/include -I.. -I../niml -Igts/src -I/usr/include/glib-1.2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -L.. -L. -L/usr/lib64 \
../parser.o ../parser_int.o ../xutil.o ../LiteClue.o -lf2c \
libSUMAGTS.a libSUMA.a libglut.a libply.a -lglib-2.0 -lmrix -lcoxplot -lmri -ltracktools -lf2c -l3DEdge \
libGLws.a -lGLU -lGL -lmri -lf2c -lXm -lXt -lXft -lXp -lXpm -lXext -lXmu -lSM -lICE -lX11 -lpng -ljpeg -lz -lexpat -lm -ldl -lc libgts.a
/bin/ld: cannot find -ltracktools
collect2: error: ld returned 1 exit status
make[1]: *** [SurfMesh] Error 1
make[1]: Leaving directory `/home/biolpsych/Downloads/afni_src/SUMA'
( if [ ! -d ./linux_openmp_64 ]; then /bin/mkdir -p ./linux_openmp_64; echo WARNING: directory ./linux_openmp_64 has been created. ; fi ;\
/bin/cp -f SUMA/suma SUMA/MakeColorMap SUMA/ROI2dataset SUMA/3dVol2Surf \
SUMA/3dSurf2Vol SUMA/SurfMeasures SUMA/SurfFWHM \
SUMA/ScaleToMap SUMA/MapIcosahedron SUMA/CreateIcosahedron \
SUMA/CompareSurfaces \
SUMA/ConvertSurface SUMA/ConvertDset SUMA/SurfClust SUMA/IsoSurface \
SUMA/ConvexHull SUMA/SUMA_glxdino SUMA/SUMA_pixmap2eps SUMA/SurfaceMetrics \
SUMA/inspec SUMA/quickspec SUMA/FSread_annot SUMA/SurfPatch SUMA/SurfQual \
SUMA/SurfSmooth SUMA/SUMA_paperplane \
SUMA/SampBias SUMA/3dSkullStrip SUMA/3dCRUISEtoAFNI \
SUMA/3dBRAIN_VOYAGERtoAFNI SUMA/3dSurfMask \
SUMA/SurfToSurf SUMA/Surf2VolCoord SUMA/ROIgrow SUMA/SurfDsetInfo \
SUMA/SurfInfo SUMA/AnalyzeTrace SUMA/DriveSuma SUMA/SurfDist \
SUMA/SpharmReco SUMA/SpharmDeco SUMA/prompt_user SUMA/SurfRetinoMap \
SUMA/ParseName SUMA/3dGenPriors SUMA/3dSeg SUMA/SurfExtrema SUMA/3dinfill \
./linux_openmp_64 ; \
if [ -f SUMA/SurfMesh ]; then /bin/cp -f SUMA/SurfMesh ./linux_openmp_64 ; fi; \
/bin/cp -f @SUMA_* ./linux_openmp_64 ;)
/bin/cp: cannot stat `SUMA/suma': No such file or directory
/bin/cp: cannot stat `SUMA/MakeColorMap': No such file or directory
/bin/cp: cannot stat `SUMA/ROI2dataset': No such file or directory
/bin/cp: cannot stat `SUMA/3dVol2Surf': No such file or directory
/bin/cp: cannot stat `SUMA/3dSurf2Vol': No such file or directory
/bin/cp: cannot stat `SUMA/SurfMeasures': No such file or directory
/bin/cp: cannot stat `SUMA/SurfFWHM': No such file or directory
/bin/cp: cannot stat `SUMA/ScaleToMap': No such file or directory
/bin/cp: cannot stat `SUMA/MapIcosahedron': No such file or directory
/bin/cp: cannot stat `SUMA/CreateIcosahedron': No such file or directory
/bin/cp: cannot stat `SUMA/CompareSurfaces': No such file or directory
/bin/cp: cannot stat `SUMA/ConvertSurface': No such file or directory
/bin/cp: cannot stat `SUMA/ConvertDset': No such file or directory
/bin/cp: cannot stat `SUMA/SurfClust': No such file or directory
/bin/cp: cannot stat `SUMA/IsoSurface': No such file or directory
/bin/cp: cannot stat `SUMA/ConvexHull': No such file or directory
/bin/cp: cannot stat `SUMA/SurfaceMetrics': No such file or directory
/bin/cp: cannot stat `SUMA/inspec': No such file or directory
/bin/cp: cannot stat `SUMA/quickspec': No such file or directory
/bin/cp: cannot stat `SUMA/FSread_annot': No such file or directory
/bin/cp: cannot stat `SUMA/SurfPatch': No such file or directory
/bin/cp: cannot stat `SUMA/SurfQual': No such file or directory
/bin/cp: cannot stat `SUMA/SurfSmooth': No such file or directory
/bin/cp: cannot stat `SUMA/SampBias': No such file or directory
/bin/cp: cannot stat `SUMA/3dSkullStrip': No such file or directory
/bin/cp: cannot stat `SUMA/3dCRUISEtoAFNI': No such file or directory
/bin/cp: cannot stat `SUMA/3dBRAIN_VOYAGERtoAFNI': No such file or directory
/bin/cp: cannot stat `SUMA/3dSurfMask': No such file or directory
/bin/cp: cannot stat `SUMA/SurfToSurf': No such file or directory
/bin/cp: cannot stat `SUMA/Surf2VolCoord': No such file or directory
/bin/cp: cannot stat `SUMA/ROIgrow': No such file or directory
/bin/cp: cannot stat `SUMA/SurfDsetInfo': No such file or directory
/bin/cp: cannot stat `SUMA/SurfInfo': No such file or directory
/bin/cp: cannot stat `SUMA/AnalyzeTrace': No such file or directory
/bin/cp: cannot stat `SUMA/DriveSuma': No such file or directory
/bin/cp: cannot stat `SUMA/SurfDist': No such file or directory
/bin/cp: cannot stat `SUMA/SpharmReco': No such file or directory
/bin/cp: cannot stat `SUMA/SpharmDeco': No such file or directory
/bin/cp: cannot stat `SUMA/prompt_user': No such file or directory
/bin/cp: cannot stat `SUMA/SurfRetinoMap': No such file or directory
/bin/cp: cannot stat `SUMA/ParseName': No such file or directory
/bin/cp: cannot stat `SUMA/3dGenPriors': No such file or directory
/bin/cp: cannot stat `SUMA/3dSeg': No such file or directory
/bin/cp: cannot stat `SUMA/SurfExtrema': No such file or directory
/bin/cp: cannot stat `SUMA/3dinfill': No such file or directory
/bin/mv -f afni to3d from3d abut 3dclust nsize 3dinfo 3dproject 3dmerge count sfim tfim ftosh 3dttest 3ddup imrotate imreg imstat 3dnvals fim2 imand FD2 sqwave immask imdump imaver 3dhistog 3dfim 3daxialize cdf 2swap 4swap mritopgm 3dANOVA 3dANOVA2 3dANOVA3 plugout_tta waver 3dnewid 3dcalc ccalc imcalc 1dmatcalc 3drefit 3dbucket 3dNLfim 3dTSgen AlphaSim 3dFWHM plugout_tt 3dnoise plugout_ijk 3dMannWhitney 3dWilcoxon 3dKruskalWallis 3dFriedman 3dRegAna 2dImReg 3dmaskave 3dbuc2fim byteorder imstack 3dDeconvolve 3dTcat 3drotate 3dvolreg 3dpc 3dfractionize 1dplot adwarp imupsam 3dIntracranial 24swap 3dTsmooth RSFgen float_scan 1dtranspose 3dFourier 3dNotes 3dROIstats 1deval 3dStatClust 3dTstat 3dmaskdump 3dTshift 3dDetrend 1dfft 1dcat 3drename 1dnorm afni_vcheck 3ddot 3dWavelets 3dfim+ imcutup imcat 3dWinsor 3dZeropad 3dTagalign 3dMean 3dAttribute cat_matvec 3dOverlap 3dClipLevel 3dZregrid 3dEntropy 3ddelay ent16 3dRowFillin 1dgrayplot 3dToutcount 1dsum 3dExtrema qhull strblast 3dConvolve 3dZcutup 3dZcat 3dTqual 3dGetrow 3dTcorrelate 3dAnatNudge 3dcopy Vecwarp 3dMINCtoAFNI 3dCM fdrval 3dAFNItoANALYZE siemens_vision ge_header mayo_analyze 3dAFNItoNIFTI 3dAutoTcorrelate 3dFDR rtfeedme 3dAutomask 3dAFNItoMINC 3dBrickStat 3dThreetoRGB Ifile 3dresample 3dAutobox 3dLRflip 3dANALYZEtoAFNI dicom_hdr 3dDespike dicom_to_raw file_tool rotcom 1ddot 1dsvd 3dDeconvolve_f 3dAnhist 3dAFNIto3D 3dUniformize 3dWarp nicat 3dSpatNorm fftest serial_helper 3dDTeig 3dDWItoDT 3dWarpDrive nifti_tool 3dAllineate nifti1_test whereami plugout_drive 3dLSS 3dMedianFilter 3dretroicor 3dAFNItoNIML 3dAFNItoRaw im2niml 3dedge3 DTIStudioFibertoSegments Dimon 3dLocalstat 3danisosmooth 3dmaxima 3dTwotoComplex 3dInvFMRI 3dmatcalc 3dAcost 3dLocalBistat 3dFWHMx 3dBlurToFWHM 1dSEM 3dDFT 3dSynthesize 1dMarry 3dEmpty 3dsvm 1dFlagMotion 3dTsort 1dTsort 3dTfitter afni_history 1dUpsample 3dLocalSVD niml_feedme 3dErrtsCormat 3dUndump 3dREMLfit 3dTnorm 3dUpsample 3dTcorrMap 3dmatmult 3dABoverlap 3dmaskSVD 1dBandpass 3dBlurInMask 3dRank 3dFFT 1dgenARMA11 3dPeriodogram 1dAstrip 3dLocalPV 3dBandpass 3dSetupGroupInCorr 3dGroupInCorr 3dTcorr1D 3dClustSim 3dRetinoPhase 3dMaskToASCII 3dttest++ 3dDTtoDWI niccc rbox qdelaunay 3dkmeans 3dXYZcat 3dPolyfit 3dNwarpApply 1dCorrelate 3dCountSpikes 3dNwarpCalc dicom_hinfo apsearch 1dBport 3dNormalityTest 3dmask_tool FIRdesign help_format cjpeg djpeg whirlgif mpeg_encode myget Xphace rmz aiv mycat gifti_tool balloon ./linux_openmp_64
/bin/mv: cannot stat `3dkmeans': No such file or directory
make: *** [install] Error 1
