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SUMA_IV_XYZextract.c
Go to the documentation of this file.00001
00002
00003 #ifdef DEBUG_1
00004 #define DEBUG_2
00005 #define DEBUG_3
00006 #endif
00007
00008 #include "SUMA_suma.h"
00009
00010 extern SUMA_CommonFields *SUMAg_CF;
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00067 #include "SUMA_suma.h"
00068
00069
00070 float * SUMA_IV_XYZextract (char *IV_filename, int *N_NodeList, int IncludeIndex)
00071 {
00072 static char FuncName[]={"SUMA_IV_XYZextract"};
00073 char s[500],serr[500];
00074 char seq_strt[5][30], seq_end[5][30];
00075 float f, *linv, *NodeList;
00076 int i, ex, si, si_exit, evl, se, se_exit, cnt, cntlim,i3, i4;
00077 int nospacing, MaxAlloc = 100;
00078 div_t cnt3;
00079 FILE*iv_file;
00080
00081 SUMA_ENTRY;
00082
00083
00084 *N_NodeList = 0;
00085
00086 linv = (float *)SUMA_malloc (MaxAlloc*sizeof(float));
00087 if (!linv)
00088 {
00089 SUMA_alloc_problem ("Allocation error in SUMA_IV-XYZExtract");
00090 SUMA_RETURN (NULL);
00091 }
00092
00093
00094 sprintf (seq_strt[0],"Coordinate3");
00095 sprintf (seq_strt[1],"{");
00096 sprintf (seq_strt[2],"point");
00097 sprintf (seq_strt[3],"[");
00098
00099 si_exit = 4;
00100
00101
00102 sprintf (seq_end[0],"]");
00103 sprintf (seq_end[1],"}");
00104
00105 se_exit = 1;
00106
00107 iv_file = fopen (IV_filename,"r");
00108 if (iv_file == NULL)
00109 {
00110 SUMA_error_message ("SUMA_IV_XYZextract","Could not open input file ",1);
00111 exit (1);
00112 }
00113
00114
00115 si = 0;
00116 ex = 1;
00117 cnt = 0;
00118
00119 nospacing = 0;
00120
00121 while (ex != EOF && si < si_exit)
00122 {
00123 ex = fscanf (iv_file,"%s",s);
00124
00125
00126
00127 if (strlen (seq_strt[si]) >= strlen (s))
00128 {
00129 evl = SUMA_iswordin (seq_strt[si],s);
00130 if (evl == 1)
00131 nospacing = 0;
00132 }
00133 else
00134 {
00135 evl = SUMA_iswordin (s,seq_strt[si]);
00136 if (evl == 1)
00137 nospacing = 1;
00138 }
00139
00140 switch (evl)
00141 {
00142 case 0:
00143 si = 0;
00144 break;
00145 case 1:
00146 if (nospacing == 1 && si == si_exit-1)
00147 {
00148 sprintf (serr,"Must have a space character between first number and last character in start sequence ( %s )",s);
00149 SUMA_error_message ("SUMA_IV_XYZextract",serr,1);
00150 exit (1);
00151
00152 }
00153 si = si +1;
00154 #ifdef DEBUG_3
00155 printf ("found %s --- si = %d\n",s,si);
00156 #endif
00157 break;
00158 default:
00159 break;
00160 }
00161 }
00162
00163
00164 se = 0;
00165 nospacing = 0;
00166
00167 while (ex != EOF && se < se_exit )
00168 {
00169 ex = fscanf (iv_file,"%s",s);
00170
00171
00172 if (strlen (seq_end[se]) >= strlen (s))
00173 {
00174 evl = SUMA_iswordin (seq_end[se],s);
00175 if (evl == 1)
00176 nospacing = 0;
00177 }
00178 else
00179 {
00180 evl = SUMA_iswordin (s,seq_end[se]);
00181 if (evl == 1)
00182 nospacing = 1;
00183 }
00184
00185 switch (evl)
00186 {
00187 case 0:
00188 f = atof (s);
00189 linv[cnt] = f;
00190 #ifdef DEBUG_3
00191 printf ("\nNumber (%d): %d is appended to end sequence !\n",cnt,linv[cnt]);
00192 #endif
00193
00194
00195 ++cnt;
00196
00197 if (cnt >= MaxAlloc - 1)
00198 {
00199 MaxAlloc = MaxAlloc + 100;
00200 linv = (float *)SUMA_realloc ((void*) linv, MaxAlloc * sizeof(float));
00201 if (!linv)
00202 {
00203 SUMA_alloc_problem ("Re-Allocation error in IV-FaceSetExtract");
00204 SUMA_RETURN (NULL);
00205 }
00206
00207 }
00208 se = 0;
00209 break;
00210 case 1:
00211 if (nospacing == 1 && se == 0)
00212 {
00213 f = atof (s);
00214 linv[cnt] = f;
00215
00216 ++cnt;
00217 #ifdef DEBUG_3
00218 printf ("\nLast number (%d): %f is appended to end sequence !\n",cnt,f);
00219 #endif
00220 }
00221 #ifdef DEBUG_3
00222 printf ("\nfound %s --- se = %d\n",s,se);
00223 #endif
00224 se = se + 1;
00225 break;
00226 default:
00227 break;
00228 }
00229
00230 }
00231 if (si < si_exit)
00232 {
00233 SUMA_error_message ("SUMA_IV_XYZextract","Could not find specified starting sequence",0);
00234 for (i=0;i<si_exit;++i)
00235 printf ("%s \t",seq_strt[i]);
00236 }
00237 else
00238 {
00239 if (se < se_exit)
00240 {
00241 SUMA_error_message ("SUMA_IV_XYZextract","Could not find specified ending sequence",0);
00242 for (i=0;i<se_exit;++i)
00243 printf ("%s \t",seq_end[i]);
00244 }
00245 else
00246 {
00247
00248 cnt3 = div (cnt,3);
00249 if (cnt3.rem != 0)
00250 {
00251 SUMA_error_message ("SUMA_IV_XYZextract","number of points read is not multiple of 3 !",0);
00252 #ifdef DEBUG_3
00253 printf ("%f XYZ sets read !!!\n",(float)cnt/3);
00254 #endif
00255 }
00256 }
00257 }
00258
00259 *N_NodeList = cnt3.quot;
00260
00261
00262 if (!IncludeIndex)
00263 NodeList = (float *) SUMA_calloc (*N_NodeList * 3, sizeof(float));
00264 else
00265 NodeList = (float *) SUMA_calloc (*N_NodeList * 4, sizeof(float));
00266
00267 if (!NodeList)
00268 {
00269 SUMA_alloc_problem("SUMA_IV_XYZextract : Could not allocate");
00270 SUMA_RETURN (NULL);
00271 }
00272
00273 if (!IncludeIndex)
00274 {
00275 for (i=0; i< cnt; ++i)
00276 {
00277 NodeList[i] = linv[i];
00278 }
00279 }
00280 else
00281 {
00282 cntlim = cnt/3;
00283 for (i=0; i < cntlim; ++i)
00284 {
00285
00286 i4 = 4*i;
00287 i3 = 3*i;
00288 NodeList[i4] = i;
00289
00290 NodeList[i4+1] = linv[i3];
00291 NodeList[i4+2] = linv[i3+1];
00292 NodeList[i4+3] = linv[i3+2];
00293
00294 }
00295
00296 }
00297
00298 fclose (iv_file);
00299 free (linv);
00300
00301 SUMA_RETURN (NodeList);
00302
00303
00304 }
00305
00306 #ifdef SUMA_IV_XYZextract_STANDALONE
00307 void usage ()
00308
00309 {
00310 printf ("\nUsage: SUMA_IV_XYZextract <IV_filename> [-o output filename] [-c]\n\n");
00311 printf ("\t Extracts the XYZ coordinates of the nodes in an IV file so that we can manipulate the \n");
00312 printf ("\t data to our liking. The program looks for a sequence of characters that seem to indicate\n");
00313 printf ("\t the start of the XYZ list. Once the sequence is found, the series of triplets is read and\n");
00314 printf ("\t written out either to a file or to the screen. The sequence of triplets must be terminated \n");
00315 printf ("\t by an ending sequence.\n");
00316 printf ("\t The starting and ending sequences are hard coded into the program.\n");
00317 printf ("\t \n");
00318 printf ("\t The program outputs an error message if :\n");
00319 printf ("\t If the starting or ending sequences are not found\n");
00320 printf ("\t If the number of points read is not a multiple of three\n");
00321 printf ("\t If the first number of the first XYZ triplet and the last character in the starting sequence \n");
00322 printf ("\t are not spearated by a space (or tab). You can fix this by manually adding a space.\n");
00323 printf ("\t \n");
00324 printf ("\t IV_filename : Filename of the ascii inventor file \n");
00325 printf ("\t [-o output-filename] : output file name containing the : NodeNumber X Y Z \n");
00326 printf ("\t of each node in the iv file. This parameter is optional\n");
00327 printf ("\t if no filename is specified, the output goes to the screen\n");
00328 printf ("\t [-co] : Count the number of nodes, do not output results\n");
00329 printf ("\t [-ii] : include the Node Index in the output.\n");
00330 printf ("\t The format of the output on each line is tab delimited:\n");
00331 printf ("\t NodeIndex X Y Z (with -ii)\n\n");
00332 printf ("\t X Y Z (without -ii)\n\n");
00333 printf ("\t This is a new version of IV-XYZextract. The old one is left for backward compatibility\n\n");
00334 printf ("\t\t\t Ziad Saad \tTue Nov 17 20:05:53 CST 1998 \n");
00335 exit (0);
00336 }
00337
00338 main (int argc,char *argv[])
00339 {
00340 char outfile[300];
00341 float * NodeList;
00342 int N_NodeList, writeout,CountOnly,paramnum, ncol,IncludeIndex;
00343
00344 if (argc < 2)
00345 {
00346 usage ();
00347 exit (1);
00348 }
00349
00350 writeout = 0;
00351 CountOnly = 0;
00352 IncludeIndex = 0;
00353 paramnum = 2;
00354 while (paramnum < argc)
00355 {
00356 if (equal_strings (argv[paramnum],"-o") == 1)
00357 {
00358 if ((paramnum + 1) >= argc)
00359 {
00360 SUMA_error_message ("SUMA_IV_XYZextract","No Output file name specified with -o option",1);
00361 exit (1);
00362 }
00363 if (filexists (argv[paramnum+1]) == 1)
00364 {
00365 SUMA_error_message ("SUMA_IV_XYZextract","Output file exists, will not overwrite",1);
00366 exit (1);
00367 }
00368 else
00369 {
00370 sprintf(outfile,"%s",argv[paramnum+1]);
00371 writeout = 1;
00372 }
00373 ++ paramnum;
00374 }
00375 if (equal_strings (argv[paramnum],"-co") == 1)
00376 {
00377 CountOnly = 1;
00378 }
00379
00380 if (equal_strings (argv[paramnum],"-ii") == 1)
00381 {
00382 IncludeIndex = 1;
00383 }
00384
00385 ++ paramnum;
00386 }
00387
00388 if (IncludeIndex)
00389 ncol = 4;
00390 else
00391 ncol = 3;
00392
00393 NodeList = SUMA_IV_XYZextract (argv[1], &N_NodeList, IncludeIndex) ;
00394
00395 if (CountOnly)
00396 printf ("%d Nodes XYZ corrdinates read\n",N_NodeList);
00397
00398 if (writeout == 1) {
00399 FILE *outfid;
00400
00401 outfid = fopen (outfile, "w");
00402 if (outfid == NULL) {
00403 fprintf (SUMA_STDERR, "Error %s: Could not open %s for writing.\n", FuncName, outfile);
00404 }else {
00405 i = 0;
00406 cntlim = N_NodeList*ncol;
00407 while (i < cntlim) {
00408 j = 0;
00409 while (j < ncol) {
00410 fprintf (outfid, "%f\t", NodeList[i]);
00411 ++i;
00412 ++j;
00413 }
00414 fprintf (outfid, "\n");
00415 }
00416 fclose (outfid);
00417 }
00418 } else if (!CountOnly) {
00419 i = 0;
00420 cntlim = N_NodeList*ncol;
00421 while (i < cntlim) {
00422 j = 0;
00423 while (j < ncol) {
00424 fprintf (SUMA_STDOUT, "%f\t", NodeList[i]);
00425 ++i;
00426 ++j;
00427 }
00428 fprintf (SUMA_STDOUT, "\n");
00429 }
00430 }
00431
00432 free (NodeList);
00433
00434 }
00435 #endif
