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FD2.c File Reference

#include "mrilib.h"
#include "overfim.h"
#include "pcor.h"
#include <stdio.h>
#include <math.h>
#include <ctype.h>
#include <sys/types.h>
#include <sys/stat.h>
#include <X11/Xos.h>
#include <X11/Xlib.h>
#include <X11/Xutil.h>
#include <X11/cursorfont.h>
#include <X11/keysym.h>
#include <sys/ioctl.h>

Go to the source code of this file.


Data Structures

struct  _key
struct  _undo_buf
struct  AJ_rgb_str
struct  S_16_c

Defines

#define CONTRAST_CHANGE_STEP   15000
#define ASC_NUL   '\0'
#define COPYRIGHT_STRING   "Copyright"
#define MAIN
#define STATUS(str)
#define INC_ALLIM   8
#define MRIDEB(str)   fprintf(stderr,"MRI: %s\n",str)
#define SIZE_tmp_ar(n)   im_tmp_ar->nx = im_tmp_ar->ny = (n)
#define SAR(k)   (allim[k]->im.short_data)
#define T_SAR(k)   (t_allim[k]->im.short_data)
#define SIZ(k)   (allim[k]->nx * allim[k]->ny)
#define DIM(k)   (allim[k]->nx)
#define IM_HEIGHT   256
#define NUM_STD_COLORS   16
#define IM_ARR   (IM_HEIGHT*IM_HEIGHT)
#define NCOLORS   808
#define MCOLORS   856
#define N_SPCTR   240
#define M_SP_COL   360
#define BELT_W   24
#define BELT_S   3
#define BELT_A   (BELT_W*IM_HEIGHT)
#define NF_MAX   10000
#define STR_L   256
#define COL_MIN   0
#define MAX_WIDTH   2048
#define EPX1   64
#define EPY1   64
#define EPS1   (2*EPX1*EPY1)
#define EPX2   128
#define EPY2   128
#define EPS2   (2*EPX2*EPY2)
#define EPX3   256
#define EPY3   256
#define EPS3   (2*EPX3*EPY3)
#define EPX4   32
#define EPY4   32
#define EPS4   (2*EPX4*EPY4)
#define OFFSET   (28*IM_HEIGHT)
#define H_SIZE   (OFFSET+IM_ARR)
#define IM_SIZE   (2*H_SIZE)
#define GX_MAX   512
#define GY_MAX   512
#define GR_DLX   3
#define GT_DLY   21
#define GL_DLX   50
#define GB_DLY   50
#define MAT_MAX   25
#define GRID_NUM   8
#define COL_NUM   5
#define GRID_COEF   50.
#define min_max_col(a)   ((a) < (256) ? (256) : ((a) > (65280) ? (65280) : (a)))
#define min(a, b)   ((a) < (b) ? (a) : (b))
#define max(a, b)   ((a) > (b) ? (a) : (b))
#define KFONT   "lucidasanstypewriter-bold-12"
#define TFONT   "pellucidatypewriter10"
#define PADDINGW   3
#define PADDINGH   5
#define KEY_1_Y   50
#define N_KEYS   18
#define LAST_K   7
#define kROT   0
#define kHLP   1
#define kAVR   2
#define kDIF   3
#define kSIG   4
#define kFFT   5
#define kFIM   6
#define kNRM   7
#define kAV1   8
#define kAV2   9
#define kIR1   10
#define kIR2   11
#define kFI1   12
#define kFI2   13
#define kFI3   14
#define kFT1   15
#define kFT2   16
#define kFT3   17
#define FFT_first_key   kFT1
#define FFT_last_key   kFT3
#define FIM_first_key   kFI1
#define FIM_last_key   kFI3
#define DFILT_NONE   0
#define DFILT_TIME   1
#define DFILT_SIGMA   (4.0*0.42466090)
#define DFILT_THRESH   0.05
#define DFILT_NREF   3
#define MAX_TOTAL_REF   (MAX_NUMORT+MAX_POLORT+DFILT_NREF+4)
#define LSQ_NONE   0
#define LSQ_SUBORT   1
#define LSQ_SUBALL   2
#define LSQ_FITORT   3
#define LSQ_FITALL   4
#define LSQ_SORFID   5
#define LSQ_LASTCODE   5
#define LSQ_EDIT_NONE   -1
#define LSQ_EDIT_ORT   1
#define LSQ_EDIT_ALL   0
#define kFI3_NUM   11
#define GRWIND   ((use_pixmap)?((Drawable)pxWind):((Drawable)GWindow))
#define MAX_SMOOTH   301
#define FFT_MAG   .2
#define REFTS_FRAC   0.369
#define MAX_NREF   (MAX_NUMORT+MAX_POLORT+99)
#define MESG(str)

Functions

void add_extra_image ()
int Ims_rot ()
int Im_help ()
int Im_diff ()
int Ref_im1 ()
int Ref_im2 ()
int Im_Aver ()
int Im_norm ()
int Av_im1 ()
int Av_im2 ()
int Smooth_line ()
int FFT_action ()
int FFT_selection ()
int FIM_action ()
int FIM_selection ()
int STD_colors ()
void x_events_loop ()
void Resample ()
void Put_image ()
void plot_line ()
void draw_marker ()
void scale_up ()
void scale_down ()
void mat_up ()
void mat_down ()
void init_mat ()
void grid_up ()
void grid_down ()
void print_plot ()
void redo_graph_window ()
void window_plane ()
void graphic_store ()
void plotx ()
void plx_txt ()
void plx_TXT ()
void subW_TXT ()
void line_color ()
void txt_color ()
void DrawSubWindow ()
void DrawTopWindow ()
int FIM_edit_time_series ()
void RWC_setup_fims ()
int check_color ()
void csfft ()
XImage * Load_Any_Arr ()
XImage * Load_Any_ind ()
XImage * Load_Any_RGB ()
int Load_Next_Arr ()
int Load_Next_ind ()
int Load_Next_RGB ()
int AJ_StoreColors ()
int AJ_init_RGB ()
int Make_RGB_lookup ()
int highbit ()
 main (argc, argv) int argc
 HandleEvent (event) XEvent *event

Variables

int dim_allim = 0
MRI_IMAGE ** allim = NULL
MRI_IMAGE ** t_allim = NULL
MRI_IMAGEim_tmp_ar = NULL
short * tmp_ar = NULL
short * nowim = NULL
int nowsize
MRI_IMAGERWC_pcim = NULL
MRI_IMAGERWC_alpim = NULL
int RWC_autoscale = 0
int RWC_overhide = 0
int RWC_framehide = 0
int RWC_checker = 0
int RWC_groupbase = 0
int AJ_base = 0
int RCR_swap = 0
int RWC_GX_MAX = GX_MAX
int RWC_GY_MAX = GY_MAX
char * tfont
char * tfont_hopefuls []
_keykey
int FFT_pressed = 0
int FT1_pressed = 0
int FT2_stat = 0
int FT3_stat = 0
int z_im1 = 0
int z_imL = 0
char * key_kFFT_FFT = "FFT"
char * key_kFFT_noFT = "noFT"
char * key_kFT1 [2] = {"edit", "end"}
char * key_kFT2 [4] = {" FT ", "0..0", "from", " to "}
char * key_kFT3 [3] = {" ", "i FT", "zero"}
int FIM_pressed = 0
int FIM_modified = 0
char * FIM_selection_name [FIM_last_key-FIM_first_key+1]
char * key_kFIM_FIM = "FIM"
char * key_kFIM_GO = "GO!"
char * DFILT_fimcode [2] = { "FIM" , "DFIM" }
int DFILT_code = DFILT_NONE
int LSQ_imedit [LSQ_LASTCODE+1]
char * LSQ_fimcode [LSQ_LASTCODE+1]
int LSQ_code = LSQ_NONE
int LSQ_refcount = 0
time_seriesLSQ_ref [MAX_TOTAL_REF]
MRI_IMARRLSQ_fitim = NULL
float * LSQ_fit [MAX_TOTAL_REF]
char * key_kFI3 [kFI3_NUM]
char * key_kFI3_help [kFI3_NUM]
int kFI3_status = -1
int kFI3_show_ref = 1
int kFI3_refsum_count = 0
int kROT_doall = 1
char * key_kROT_all = "Rot"
char * key_kROT_one = "Rot1"
_key xtkeys [N_KEYS]
char * kfont
char * ffc
char * fbc
unsigned long ForeColor
unsigned long BackColor
unsigned long FKeyFore
unsigned long FKeyBack
XColor xcsd
XColor xced
XFontStruct * kfontinfo
Font keyfont
int keywide [N_KEYS]
int minwide
int keyhigh
GC Fkeyigc
GC Fkeygc
int invkey = -1
int exp_done [N_KEYS+3]
short int a_rot [H_SIZE]
short int rot_nr = 0
short int rot_direct
short int rot_state
int sub_W_x
int sub_W_y
int top_W_x
int top_W_y
int v_point_x = -20
int v_point_y = 0
int move_Vpointer = 0
int diff_im = 0
int Im_1
int Im_2
int im1_done = 0
int extra_im = 0
int avr_grp = 0
int Av_1
int Av_2
int av1_done = 0
int Av_length = 1
int fim_dif = 0
int fim_avr = 0
int redraw
int txtW_ON = 0
int c_f = 0
int st_8 []
int st_4 []
int st_2 []
S_16_c Solid_color [16]
short int color_x11 [16]
XPoint sm_cir [12]
char * f_name [NF_MAX]
char * ProgramName = NULL
char * Xdef_Name = "FD"
char * display
char * geom
char ** ptr
int FIRST = 1
int SQUE_NR
int x00 = 0
int y00 = 0
int back_to_main = 0
XEvent event
XEvent w_event
XEvent first_event
Display * theDisp
int theScreen
Window rootW
Window theWindow
Window GWindow
Window subWindow
Window topWindow
GC theGC
GC txtGC
unsigned long fcol
unsigned long bcol
Font mfont
XFontStruct * afinfo
XFontStruct * mfinfo
Visual * theVisual
XImage * theImage
XImage * expImage
XImage * theBelt
XImage * expBelt
int eWIDE
int eHIGH
int aWIDE
int eW
int eH
int iWIDE
int iHIGH
int FIM_opt_colors = 0
float FIM_opt_thr [MAX_FIM_COLORS]
char * FIM_opt_pos [MAX_FIM_COLORS]
char * FIM_opt_neg [MAX_FIM_COLORS]
unsigned short tmp1 [NCOLORS]
unsigned short tmp2 [NCOLORS]
unsigned short tmp3 [NCOLORS]
int No_Color_init = 1
int No_Grey_init = 1
int Dispcells
int Planes
int repeat_status = 0
int ncolors
int YES_color = 0
int INgrey [NCOLORS]
XColor MYcol [NCOLORS]
XColor MYgrey [NCOLORS]
XColor any_col
XColor rgb_col
Colormap CMap
unsigned long plane_masks [1]
unsigned long pixels [MCOLORS]
unsigned int nplmsk = 0
unsigned int ucolors
unsigned int uucolors
Pixmap pxWind
int max_xlines = 0
int use_pixmap = 1
int spectrum = N_SPCTR
int Im_Nr = 0
int N_im = 0
int I_lck = 0
int tmp_Nr = 0
int N_lck = 0
int old_grid
int old_im = -1
int x_mag
int ref_ar [H_SIZE]
int av_ar [H_SIZE]
int Cx
int Cy
short int imx [IM_ARR]
short int tmp_imx [IM_ARR]
short int belt_ar [BELT_A]
short int belt_arr [BELT_A]
int Mltx [MAX_WIDTH]
int Mlty [MAX_WIDTH]
XPoint a_line [NF_MAX]
float del1
float coef1
float auto_scale
int min1
int fsize
int isize
int ar_size
int NC
int nc_option = 0
char T_name [STR_L]
char I_name [STR_L]
char G_name [STR_L]
int B1_action = 0
int Im_frst = 0
int fr_index = -7
int Argc
char ** Argv = NULL
int * plot [MAT_MAX][MAT_MAX]
int * val [MAT_MAX][MAT_MAX]
int * LSQ_val
int * LSQ_plot
int pmin [MAT_MAX][MAT_MAX]
int pmax [MAT_MAX][MAT_MAX]
int mat
int xc
int yc
int mark
int xorigin [MAT_MAX][MAT_MAX]
int yorigin [MAT_MAX][MAT_MAX]
int i
int j
int xpoint
int ypoint
int npoints
int iscale
int gx
int gy
int xspace
int yspace
int grid_index
int color_index
char plotbuf [10 *NF_MAX]
char pfname [80]
char fnum [80]
int xpoint_0 = -1
int ypoint_0 = -1
float grid_far [2 *GRID_NUM]
float grid_coef = 1.
int mytxt
int idx
int idy
int mdx1
int mdy1
char strp [STR_L]
char strF [STR_L]
char strT [STR_L]
char * color [5] = {"cyan","red","yellow","green","cornflowerblue"}
int im_size
int offs
float gamm
int AJ_nr
int AJ_off
int i_plot [NF_MAX]
float AJ_sigma
float AJ_norm
float AJ_gauss [MAX_SMOOTH]
float f_plot [NF_MAX+MAX_SMOOTH]
char * formt [4][4]
int t_points
int t_N_im
float t_coef1
int t_min1
complexc_arr = NULL
complexr_arr = NULL
int FT_dim
int FT_size
int FT_disp
int FT_done = 0
int FT_grid = 0
int FT_graph_on = 0
int grid_timed = 0
_undo_bufundo_buf = NULL
_undo_bufundo_ref = NULL
int act_undo = -1
int ref_undo = -1
char FT_name [100]
int im_f
int phase = 0
float fft_mag = FFT_MAG
float * T_ref
float * avr_A = NULL
int avr_nr = 0
int cancell_FT = 0
int AJ_PseudoColor = 1
AJ_rgb_str AJ_rgb [MCOLORS]
unsigned long AJ_RGB [MCOLORS]
int bperpix = 8
int border
int STD_indx [NUM_STD_COLORS+MAX_EXTRA_COLORS]
char * argv []
 ipx []
int x
int y
int i1
int i2
int x1
int x2
int amin
int nshade
 h
XImage * image
XImage ** emage
int argc
 a2
Window Wind
unsigned int shape
char * fg_col
char * bg_col
char fname []
char arr []
XImage * Image
 ys
 mod
char * str
XEvent * ev
Window keyW
 my
Window topW
XFontStruct * finf
char * name
char * text
int str_l
int check
int g
int b
int ind
int nr
Colormap cmap
XColor * mc
int nc
char * out

Define Documentation

#define ASC_NUL   '\0'
 

Definition at line 11 of file FD2.c.

#define BELT_A   (BELT_W*IM_HEIGHT)
 

Definition at line 111 of file FD2.c.

#define BELT_S   3
 

Definition at line 110 of file FD2.c.

#define BELT_W   24
 

Definition at line 109 of file FD2.c.

#define COL_MIN   0
 

Definition at line 115 of file FD2.c.

#define COL_NUM   5
 

Definition at line 146 of file FD2.c.

#define CONTRAST_CHANGE_STEP   15000
 

Definition at line 9 of file FD2.c.

#define COPYRIGHT_STRING   "Copyright"
 

Definition at line 14 of file FD2.c.

#define DFILT_NONE   0
 

Definition at line 258 of file FD2.c.

#define DFILT_NREF   3
 

Definition at line 262 of file FD2.c.

#define DFILT_SIGMA   (4.0*0.42466090)
 

Definition at line 260 of file FD2.c.

#define DFILT_THRESH   0.05
 

Definition at line 261 of file FD2.c.

#define DFILT_TIME   1
 

Definition at line 259 of file FD2.c.

#define DIM k       (allim[k]->nx)
 

Definition at line 52 of file FD2.c.

#define EPS1   (2*EPX1*EPY1)
 

Definition at line 120 of file FD2.c.

#define EPS2   (2*EPX2*EPY2)
 

Definition at line 124 of file FD2.c.

#define EPS3   (2*EPX3*EPY3)
 

Definition at line 128 of file FD2.c.

#define EPS4   (2*EPX4*EPY4)
 

Definition at line 132 of file FD2.c.

#define EPX1   64
 

Definition at line 118 of file FD2.c.

#define EPX2   128
 

Definition at line 122 of file FD2.c.

#define EPX3   256
 

Definition at line 126 of file FD2.c.

#define EPX4   32
 

Definition at line 130 of file FD2.c.

#define EPY1   64
 

Definition at line 119 of file FD2.c.

#define EPY2   128
 

Definition at line 123 of file FD2.c.

#define EPY3   256
 

Definition at line 127 of file FD2.c.

#define EPY4   32
 

Definition at line 131 of file FD2.c.

#define FFT_first_key   kFT1
 

Definition at line 227 of file FD2.c.

#define FFT_last_key   kFT3
 

Definition at line 228 of file FD2.c.

#define FFT_MAG   .2
 

Definition at line 589 of file FD2.c.

#define FIM_first_key   kFI1
 

Definition at line 241 of file FD2.c.

#define FIM_last_key   kFI3
 

Definition at line 242 of file FD2.c.

#define GB_DLY   50
 

Definition at line 143 of file FD2.c.

#define GL_DLX   50
 

Definition at line 142 of file FD2.c.

#define GR_DLX   3
 

Definition at line 140 of file FD2.c.

#define GRID_COEF   50.
 

Definition at line 147 of file FD2.c.

#define GRID_NUM   8
 

Definition at line 145 of file FD2.c.

#define GRWIND   ((use_pixmap)?((Drawable)pxWind):((Drawable)GWindow))
 

Definition at line 504 of file FD2.c.

#define GT_DLY   21
 

Definition at line 141 of file FD2.c.

#define GX_MAX   512
 

Definition at line 138 of file FD2.c.

#define GY_MAX   512
 

Definition at line 139 of file FD2.c.

#define H_SIZE   (OFFSET+IM_ARR)
 

Definition at line 135 of file FD2.c.

#define IM_ARR   (IM_HEIGHT*IM_HEIGHT)
 

Definition at line 98 of file FD2.c.

#define IM_HEIGHT   256
 

Definition at line 96 of file FD2.c.

Referenced by ISQ_make_image(), ISQ_make_montage(), and open_MCW_imseq().

#define IM_SIZE   (2*H_SIZE)
 

Definition at line 136 of file FD2.c.

#define INC_ALLIM   8
 

Definition at line 33 of file FD2.c.

#define kAV1   8
 

Definition at line 211 of file FD2.c.

#define kAV2   9
 

Definition at line 212 of file FD2.c.

#define kAVR   2
 

Definition at line 205 of file FD2.c.

#define kDIF   3
 

Definition at line 206 of file FD2.c.

#define KEY_1_Y   50
 

Definition at line 175 of file FD2.c.

#define kFFT   5
 

Definition at line 208 of file FD2.c.

#define kFI1   12
 

Definition at line 216 of file FD2.c.

#define kFI2   13
 

Definition at line 217 of file FD2.c.

#define kFI3   14
 

Definition at line 218 of file FD2.c.

#define kFI3_NUM   11
 

Definition at line 291 of file FD2.c.

#define kFIM   6
 

Definition at line 209 of file FD2.c.

#define KFONT   "lucidasanstypewriter-bold-12"
 

Definition at line 171 of file FD2.c.

#define kFT1   15
 

Definition at line 220 of file FD2.c.

#define kFT2   16
 

Definition at line 221 of file FD2.c.

#define kFT3   17
 

Definition at line 222 of file FD2.c.

#define kHLP   1
 

Definition at line 204 of file FD2.c.

#define kIR1   10
 

Definition at line 213 of file FD2.c.

#define kIR2   11
 

Definition at line 214 of file FD2.c.

#define kNRM   7
 

Definition at line 210 of file FD2.c.

#define kROT   0
 

Definition at line 203 of file FD2.c.

#define kSIG   4
 

Definition at line 207 of file FD2.c.

#define LAST_K   7
 

Definition at line 201 of file FD2.c.

#define LSQ_EDIT_ALL   0
 

Definition at line 279 of file FD2.c.

#define LSQ_EDIT_NONE   -1
 

Definition at line 277 of file FD2.c.

#define LSQ_EDIT_ORT   1
 

Definition at line 278 of file FD2.c.

#define LSQ_FITALL   4
 

Definition at line 272 of file FD2.c.

#define LSQ_FITORT   3
 

Definition at line 271 of file FD2.c.

#define LSQ_LASTCODE   5
 

Definition at line 275 of file FD2.c.

#define LSQ_NONE   0
 

Definition at line 268 of file FD2.c.

#define LSQ_SORFID   5
 

Definition at line 273 of file FD2.c.

#define LSQ_SUBALL   2
 

Definition at line 270 of file FD2.c.

#define LSQ_SUBORT   1
 

Definition at line 269 of file FD2.c.

#define M_SP_COL   360
 

Definition at line 108 of file FD2.c.

#define MAIN
 

Definition at line 17 of file FD2.c.

#define MAT_MAX   25
 

Definition at line 144 of file FD2.c.

#define max a,
b       ((a) > (b) ? (a) : (b))
 

Definition at line 167 of file FD2.c.

#define MAX_NREF   (MAX_NUMORT+MAX_POLORT+99)
 

#define MAX_SMOOTH   301
 

Definition at line 550 of file FD2.c.

#define MAX_TOTAL_REF   (MAX_NUMORT+MAX_POLORT+DFILT_NREF+4)
 

Definition at line 266 of file FD2.c.

#define MAX_WIDTH   2048
 

Definition at line 116 of file FD2.c.

#define MCOLORS   856
 

Definition at line 105 of file FD2.c.

#define MESG str   
 

#define min a,
b       ((a) < (b) ? (a) : (b))
 

Definition at line 166 of file FD2.c.

#define min_max_col a       ((a) < (256) ? (256) : ((a) > (65280) ? (65280) : (a)))
 

Definition at line 165 of file FD2.c.

#define MRIDEB str       fprintf(stderr,"MRI: %s\n",str)
 

Definition at line 35 of file FD2.c.

#define N_KEYS   18
 

Definition at line 200 of file FD2.c.

#define N_SPCTR   240
 

Definition at line 107 of file FD2.c.

#define NCOLORS   808
 

Definition at line 104 of file FD2.c.

#define NF_MAX   10000
 

Definition at line 112 of file FD2.c.

#define NUM_STD_COLORS   16
 

Definition at line 97 of file FD2.c.

#define OFFSET   (28*IM_HEIGHT)
 

Definition at line 134 of file FD2.c.

#define PADDINGH   5
 

Definition at line 174 of file FD2.c.

#define PADDINGW   3
 

Definition at line 173 of file FD2.c.

#define REFTS_FRAC   0.369
 

#define SAR k       (allim[k]->im.short_data)
 

Definition at line 49 of file FD2.c.

#define SIZ k       (allim[k]->nx * allim[k]->ny)
 

Definition at line 51 of file FD2.c.

#define SIZE_tmp_ar n       im_tmp_ar->nx = im_tmp_ar->ny = (n)
 

Definition at line 44 of file FD2.c.

#define STATUS str   
 

Definition at line 22 of file FD2.c.

#define STR_L   256
 

Definition at line 113 of file FD2.c.

#define T_SAR k       (t_allim[k]->im.short_data)
 

Definition at line 50 of file FD2.c.

#define TFONT   "pellucidatypewriter10"
 

Definition at line 172 of file FD2.c.


Function Documentation

void add_extra_image  
 

int AJ_init_RGB  
 

int AJ_StoreColors  
 

int Av_im1  
 

int Av_im2  
 

int check_color  
 

void csfft  
 

void draw_marker  
 

void DrawSubWindow  
 

void DrawTopWindow  
 

int FFT_action  
 

int FFT_selection  
 

int FIM_action  
 

int FIM_edit_time_series  
 

int FIM_selection  
 

void graphic_store  
 

void grid_down  
 

Referenced by GRA_handle_keypress().

void grid_up  
 

Referenced by GRA_handle_keypress().

HandleEvent event   
 

int highbit   [static]
 

Referenced by get_X11_colordef(), MCW_new_DC(), and reload_DC_colordef().

int Im_Aver  
 

int Im_diff  
 

int Im_help  
 

int Im_norm  
 

int Ims_rot  
 

void init_mat  
 

Referenced by drive_MCW_grapher(), GRA_ggap_CB(), GRA_gthick_CB(), GRA_handle_keypress(), GRA_mat_choose_CB(), GRA_new_pixmap(), init_const(), mat_down(), and mat_up().

void line_color  
 

XImage* Load_Any_Arr  
 

XImage* Load_Any_ind  
 

XImage* Load_Any_RGB  
 

int Load_Next_Arr  
 

int Load_Next_ind  
 

int Load_Next_RGB  
 

main argc   ,
argv   
 

int Make_RGB_lookup  
 

void mat_down  
 

Referenced by GRA_handle_keypress().

void mat_up  
 

Referenced by GRA_handle_keypress().

void plot_line  
 

void plotx  
 

void plx_TXT  
 

void plx_txt  
 

void print_plot  
 

void Put_image  
 

void redo_graph_window  
 

int Ref_im1  
 

int Ref_im2  
 

void Resample  
 

void RWC_setup_fims  
 

void scale_down  
 

Referenced by GRA_handle_keypress().

void scale_up  
 

Referenced by GRA_handle_keypress().

int Smooth_line  
 

int STD_colors  
 

void subW_TXT  
 

void txt_color  
 

void window_plane  
 

void x_events_loop  
 


Variable Documentation

a2
 

Definition at line 2737 of file FD2.c.

Referenced by AFNI_brick_to_mri(), AFNI_overlay(), apply_orientation(), DC_init_im_col(), gaminv(), idct_col(), idct_row(), main(), qzit_(), and qzval_().

XPoint a_line[NF_MAX]
 

Definition at line 513 of file FD2.c.

Referenced by plot_graphs().

short int a_rot[H_SIZE]
 

Definition at line 356 of file FD2.c.

int act_undo = -1
 

Definition at line 586 of file FD2.c.

XFontStruct* afinfo
 

Definition at line 474 of file FD2.c.

int AJ_base = 0
 

Definition at line 63 of file FD2.c.

float AJ_gauss[MAX_SMOOTH]
 

Definition at line 553 of file FD2.c.

float AJ_norm
 

Definition at line 552 of file FD2.c.

int AJ_nr
 

Definition at line 551 of file FD2.c.

int AJ_off
 

Definition at line 551 of file FD2.c.

int AJ_PseudoColor = 1
 

Definition at line 611 of file FD2.c.

unsigned long AJ_RGB[MCOLORS]
 

Definition at line 615 of file FD2.c.

AJ_rgb_str AJ_rgb[MCOLORS]
 

Definition at line 614 of file FD2.c.

float AJ_sigma
 

Definition at line 552 of file FD2.c.

MRI_IMAGE** allim = NULL
 

Definition at line 39 of file FD2.c.

int amin
 

Definition at line 2468 of file FD2.c.

XColor any_col
 

Definition at line 496 of file FD2.c.

Referenced by DC_fg_colortext().

int ar_size
 

Definition at line 517 of file FD2.c.

int argc
 

Definition at line 2635 of file FD2.c.

Referenced by addto_args(), AFNI_logger(), AFNI_parse_args(), AFNI_read_inputs(), append_string_to_args(), applyMask(), B2F_read_opts(), basis_write_iresp(), basis_write_sresp(), BUCK_read_opts(), CALC_read_opts(), ChangeDirectory(), CL_read_opts(), Clp_NewParser(), do_xrestore_stuff(), DT_read_opts(), EDIT_check_argv(), EX_read_opts(), FTOSH_getopts(), get_inputs(), get_line_opt(), get_options(), get_user_inputs(), handle_args(), HI_read_opts(), I_args(), init_options(), initialize(), initialize_program(), isarg(), ListDirectory(), main(), MRG_read_opts(), output_results(), parse_args(), parse_switches(), PC_read_opts(), prepend_string_to_args(), print_text_marker(), process_all_datasets(), Process_Options(), qh_init_A(), qh_init_qhull_command(), read_options(), SC_read_opts(), select_file_type(), set_params(), SetBrowseGlob(), SFIM_getopts(), SUMA_3dBRAIN_VOYAGERtoAFNI_ParseInput(), SUMA_3dCRUISEtoAFNI_ParseInput(), SUMA_3dSurfMask_ParseInput(), SUMA_coarsen_ParseInput(), SUMA_Parse_IO_Args(), SUMA_ParseInput_basics(), SUMA_PROGRAM_NAME_ParseInput(), SUMA_SampBias_ParseInput(), SUMA_SurfToSurf_ParseInput(), TCAT_read_opts(), TFIM_getopts(), tross_commandline(), tross_Make_History(), TT_read_opts(), UC_read_opts(), write_afni_fict(), write_afni_fizt(), write_bucket_data(), write_output(), write_results(), write_ts_array(), and ZCAT_read_opts().

int Argc
 

Definition at line 523 of file FD2.c.

char* argv[]
 

Definition at line 5785 of file FD2.c.

char** Argv = NULL
 

Definition at line 524 of file FD2.c.

char arr
 

Definition at line 549 of file fim.c.

float auto_scale
 

Definition at line 515 of file FD2.c.

int av1_done = 0
 

Definition at line 360 of file FD2.c.

int Av_1
 

Definition at line 360 of file FD2.c.

int Av_2
 

Definition at line 360 of file FD2.c.

int av_ar[H_SIZE]
 

Definition at line 509 of file FD2.c.

int Av_length = 1
 

Definition at line 360 of file FD2.c.

float* avr_A = NULL
 

Definition at line 593 of file FD2.c.

int avr_grp = 0
 

Definition at line 360 of file FD2.c.

int avr_nr = 0
 

Definition at line 594 of file FD2.c.

int aWIDE
 

Definition at line 477 of file FD2.c.

double ** b
 

Definition at line 182 of file vp_linalg.c.

int B1_action = 0
 

Definition at line 521 of file FD2.c.

int back_to_main = 0
 

Definition at line 465 of file FD2.c.

unsigned long BackColor
 

Definition at line 348 of file FD2.c.

unsigned long bcol
 

Definition at line 472 of file FD2.c.

Referenced by AFNI_niml_redisplay_CB(), and PLUG_read_plugin().

short int belt_ar[BELT_A]
 

Definition at line 511 of file FD2.c.

short int belt_arr[BELT_A]
 

Definition at line 511 of file FD2.c.

char * bg_col
 

Definition at line 3208 of file FD2.c.

int border
 

Definition at line 616 of file FD2.c.

Referenced by glutGet(), mri_to_XImage(), pixar_to_XImage(), and XImage_to_mri().

int bperpix = 8
 

Definition at line 616 of file FD2.c.

complex* c_arr = NULL
 

Definition at line 567 of file FD2.c.

int c_f = 0
 

Definition at line 403 of file FD2.c.

int cancell_FT = 0
 

Definition at line 595 of file FD2.c.

int check
 

Definition at line 6184 of file FD2.c.

Referenced by betadf(), check_duplicated_short_options(), chkgot(), and gaudf().

Colormap cmap
 

Definition at line 7643 of file FD2.c.

Referenced by __glutAssociateColormap(), __glutFreeColormap(), __glutSetupColormap(), AFNI_vnlist_func_overlay(), associateNewColormap(), getShareableColormap(), glutSetColor(), main(), map_v2s_results(), MCW_alter_widget_cursor(), MCW_get_colormap(), MCW_invert_widget(), MCW_set_colormap(), MCW_set_widget_bg(), noFaultXAllocColor(), PBAR_add_bigmap(), RWC_drag_cursor(), SUMA_cb_AfniLink_toggled(), SUMA_Engine(), SUMA_getShareableColormap_Eng(), and SUMA_Interpret_AFNIColor().

Colormap CMap
 

Definition at line 6178 of file FD2.c.

float coef1
 

Definition at line 515 of file FD2.c.

int color = {"cyan","red","yellow","green","cornflowerblue"}
 

Definition at line 7645 of file FD2.c.

Referenced by add_histogram_color(), AFNI_overlay(), DC_spectrum_AJJ(), DC_spectrum_ZSS(), find_color_index(), find_color_or_error(), glutCopyColormap(), glutSetColor(), load_closest(), menuVisualSetup(), mri_quantize(), name_color(), new_viewer(), noFaultXAllocColor(), qh_printafacet(), qh_printend4geom(), qh_printfacet2geom(), qh_printfacet2geom_points(), qh_printfacet3geom_nonsimplicial(), qh_printfacet3geom_points(), qh_printfacet3geom_simplicial(), qh_printfacet4geom_nonsimplicial(), qh_printfacet4geom_simplicial(), qh_printhyperplaneintersection(), qh_printline3geom(), qh_printpointvect(), SUMA_createColGradient(), TTRR_load_file(), and TTRR_save_CB().

int color_index
 

Definition at line 536 of file FD2.c.

short int color_x11[16]
 

Initial value:

 { -1, -1, -1, -1, -1, -1, -1, -1,
                                  -1, -1, -1, -1, -1, -1, -1, -1 }

Definition at line 451 of file FD2.c.

int Cx
 

Definition at line 509 of file FD2.c.

Referenced by SUMA_GetCx(), SUMA_input(), SUMA_SetConvexityPlaneDefaults(), SUMA_SurfaceMetrics_eng(), and SUMA_SurfaceObject_Info().

int Cy
 

Definition at line 509 of file FD2.c.

float del1
 

Definition at line 515 of file FD2.c.

int DFILT_code = DFILT_NONE [static]
 

Definition at line 264 of file FD2.c.

char* DFILT_fimcode[2] = { "FIM" , "DFIM" } [static]
 

Definition at line 263 of file FD2.c.

int diff_im = 0
 

Definition at line 359 of file FD2.c.

int dim_allim = 0
 

Definition at line 37 of file FD2.c.

int Dispcells
 

Definition at line 494 of file FD2.c.

char* display
 

Definition at line 461 of file FD2.c.

Referenced by __glutOpenXConnection(), AFNI_load_defaults(), choose_visual(), create_viewer_window(), find_viewer(), get_X11_colordef(), Gif_NewXContext(), Gif_NewXContextFromVisual(), glutInit(), loop(), main(), new_viewer(), RWC_getname(), view_frame(), and xxx_get_colormap().

* eH
 

Definition at line 2518 of file FD2.c.

int eHIGH
 

Definition at line 477 of file FD2.c.

XImage ** emage
 

Definition at line 2519 of file FD2.c.

Referenced by resize_XImage().

XEvent * ev
 

Definition at line 5818 of file FD2.c.

Referenced by AFNI_crosshair_EV(), AFNI_pbar_EV(), AFNI_process_interrupts(), AFNI_viewbut_EV(), AV_leave_EV(), calculate_results(), DRAW_label_EV(), elvis_CB(), expose_CB(), GRA_drawing_EV(), GRA_handle_keypress(), GRAF_drawing_EV(), GRAF_pasdrawing_EV(), ISQ_butsave_EV(), ISQ_button2_EV(), ISQ_drawing_EV(), main(), MCW_click_help_CB(), MCW_popup_message(), MCW_popup_meter(), optmenu_EV(), PBAR_button_EV(), RCREND_accum_lab_EV(), RCREND_pbarmenu_EV(), RCREND_xhair_EV(), REND_pbarmenu_EV(), REND_xhair_EV(), RT_process_xevents(), SUMA_CreateTable(), SUMA_leave_EV(), SUMA_leave_TableField(), SUMA_optmenu_EV(), SUMA_RangeTableCell_EV(), SUMA_SetRangeTableTit_EV(), and T3D_pointer_leave_EV().

XEvent event
 

Definition at line 466 of file FD2.c.

Referenced by __glutProcessDeviceEvents(), AFNI_crosshair_EV(), AFNI_pbar_EV(), AFNI_range_rotate_av_CB(), AFNI_viewbut_EV(), Enter_event(), GRA_drawing_EV(), GRAF_drawing_EV(), GRAF_pasdrawing_EV(), input_CB(), ISQ_butsave_EV(), ISQ_button2_EV(), ISQ_cropper(), ISQ_drawing_EV(), Leave_event(), main(), processEvents(), RCREND_accum_lab_EV(), RCREND_pbarmenu_EV(), RCREND_xhair_EV(), REND_pbarmenu_EV(), REND_xhair_EV(), SUMA_mapStateChanged(), SUMA_SetcSV(), SUMA_unSetcSV(), and XcgLiteClueDispatchEvent().

* eW
 

Definition at line 2518 of file FD2.c.

int eWIDE
 

Definition at line 477 of file FD2.c.

int exp_done[N_KEYS+3]
 

Definition at line 355 of file FD2.c.

XImage * expBelt
 

Definition at line 476 of file FD2.c.

XImage * expImage
 

Definition at line 476 of file FD2.c.

int extra_im = 0
 

Definition at line 359 of file FD2.c.

char* f_name[NF_MAX]
 

Definition at line 458 of file FD2.c.

float f_plot[NF_MAX+MAX_SMOOTH]
 

Definition at line 554 of file FD2.c.

char * fbc
 

Definition at line 347 of file FD2.c.

Referenced by calculate_fbc().

unsigned long fcol
 

Definition at line 472 of file FD2.c.

char * ffc
 

Definition at line 347 of file FD2.c.

float fft_mag = FFT_MAG
 

Definition at line 590 of file FD2.c.

int FFT_pressed = 0
 

Definition at line 231 of file FD2.c.

char* fg_col
 

Definition at line 3208 of file FD2.c.

int fim_avr = 0
 

Definition at line 361 of file FD2.c.

int fim_dif = 0
 

Definition at line 361 of file FD2.c.

int FIM_modified = 0
 

Definition at line 245 of file FD2.c.

int FIM_opt_colors = 0
 

Definition at line 483 of file FD2.c.

char * FIM_opt_neg[MAX_FIM_COLORS]
 

Definition at line 485 of file FD2.c.

char* FIM_opt_pos[MAX_FIM_COLORS]
 

Definition at line 485 of file FD2.c.

float FIM_opt_thr[MAX_FIM_COLORS]
 

Definition at line 484 of file FD2.c.

int FIM_pressed = 0
 

Definition at line 245 of file FD2.c.

char* FIM_selection_name[FIM_last_key-FIM_first_key+1]
 

Initial value:

      { "Correlation Coefficient Threshold (0..1)"    , 
        "Vector Filename ('!nofim'==none)"            ,
        NULL                                          
      }

Definition at line 247 of file FD2.c.

XFontStruct* finf
 

Definition at line 6180 of file FD2.c.

int FIRST = 1
 

Definition at line 463 of file FD2.c.

XEvent first_event
 

Definition at line 466 of file FD2.c.

unsigned long FKeyBack
 

Definition at line 348 of file FD2.c.

unsigned long FKeyFore
 

Definition at line 348 of file FD2.c.

GC Fkeygc
 

Definition at line 353 of file FD2.c.

GC Fkeyigc
 

Definition at line 353 of file FD2.c.

char fname
 

Definition at line 549 of file fim.c.

char fnum[80]
 

Definition at line 537 of file FD2.c.

Referenced by check_func_name(), read_ge_files(), scan_ge_files(), and write_output().

unsigned long ForeColor
 

Definition at line 348 of file FD2.c.

char* formt[4][4]
 

Initial value:

 {
          {     "%s.%d",      "%s.%02d",      "%s.%03d",      "%s.%04d"},
          {  "%s_%d.%d",   "%s_%d.%02d",   "%s_%d.%03d",   "%s_%d.%04d"},
          {"%s_%02d.%d", "%s_%02d.%02d", "%s_%02d.%03d", "%s_%02d.%04d"},
          {"%s_%03d.%d", "%s_%03d.%02d", "%s_%03d.%03d", "%s_%03d.%04d"} }

Definition at line 557 of file FD2.c.

int fr_index = -7
 

Definition at line 521 of file FD2.c.

int fsize
 

Definition at line 517 of file FD2.c.

int FT1_pressed = 0
 

Definition at line 232 of file FD2.c.

int FT2_stat = 0
 

Definition at line 232 of file FD2.c.

int FT3_stat = 0
 

Definition at line 232 of file FD2.c.

int FT_dim
 

Definition at line 569 of file FD2.c.

int FT_disp
 

Definition at line 571 of file FD2.c.

int FT_done = 0
 

Definition at line 572 of file FD2.c.

int FT_graph_on = 0
 

Definition at line 574 of file FD2.c.

int FT_grid = 0
 

Definition at line 573 of file FD2.c.

char FT_name[100]
 

Definition at line 587 of file FD2.c.

int FT_size
 

Definition at line 570 of file FD2.c.

double * g
 

Definition at line 1636 of file vp_context.c.

char G_name[STR_L]
 

Definition at line 520 of file FD2.c.

float gamm
 

Definition at line 547 of file FD2.c.

Referenced by DC_init_im_col(), DC_init_im_gry(), DC_spectrum_AJJ(), and DC_spectrum_ZSS().

char * geom
 

Definition at line 461 of file FD2.c.

Referenced by AFNI_decode_geom(), and decode_geom().

float grid_coef = 1.
 

Definition at line 539 of file FD2.c.

float grid_far[2*GRID_NUM]
 

Definition at line 539 of file FD2.c.

int grid_index
 

Definition at line 536 of file FD2.c.

int grid_timed = 0
 

Definition at line 575 of file FD2.c.

Window GWindow
 

Definition at line 470 of file FD2.c.

int gx
 

Definition at line 535 of file FD2.c.

Referenced by draw_grids(), GRA_drawing_EV(), warp3D_sharm2_grad(), and warp3D_sharm3_grad().

int gy
 

Definition at line 535 of file FD2.c.

Referenced by draw_grids(), GRA_drawing_EV(), warp3D_sharm2_grad(), and warp3D_sharm3_grad().

int h
 

Definition at line 1154 of file readframe.c.

int i
 

Definition at line 535 of file FD2.c.

Referenced by __glutCreateWindow(), __glutGetMenuItem(), __glutGetTransparentPixel(), __glutGetWindow(), __glutPaintMenu(), __glutProcessDeviceEvents(), __glutSetupColormap(), __glutXGetLayerVisualInfo(), add_comment(), add_histogram_color(), add_obj_info(), addunder(), AFNI_drive_set_ijk(), AFNI_drive_set_xhairs(), AFNI_setup_inten_pbar(), alloc_barray(), alloc_fs_workspace(), alloc_sarray(), allocate2D(), allocate_arrays(), allocate_closest(), allocate_colors(), allocate_pieces(), alngam(), alter_MCW_pbar(), ambiguity_error(), analyz(), apply_color_transforms(), apply_frame(), apply_image(), applyMask(), arg_verify(), argsort(), argverify(), array_to_matrix(), array_to_vector(), ascii_get_element(), assert_hist_transparency(), associateNewColormap(), average_extrema(), b_char(), bad_atypes(), basym(), betaln(), bgrat(), binary_get_element(), blank_frameset(), bpser(), brcmp1(), brcomp(), build_ycc_rgb_table(), bup(), byteswap4(), byteswap8(), c_conj(), c_get(), c_mult(), c_padd(), c_scale(), calc_acontr_mean(), calc_CC(), calc_centroid(), calc_constraints(), calc_error(), calc_good_fit(), calc_QuadrantCC(), calc_reflection(), calc_shift(), calc_SpearmanCC(), calc_sse(), calc_sspe(), calc_stat(), calc_sum_sq_acontr(), calc_tcoef(), calculate_adifferences(), calculate_bdifferences(), calculate_cdifferences(), calculate_differences(), calculate_min_code_bits(), calculate_results(), calculate_ss(), calculate_ssi(), calculate_ssij(), calculate_ssijk(), calculate_ssijkm(), calculate_ssik(), calculate_sstr(), calculate_sum(), calculate_sum_sq(), calculate_y(), calculate_ysum(), calcWithOffsets(), cds(), centerOfMass(), check_duplicated_short_options(), check_for_valid_inputs(), check_output_files(), check_temporary_files(), choose_visual(), Clp_AddStringListTypeVec(), Clp_AddType(), Clp_DeleteParser(), Clp_NewParser(), Clp_SetOptionChar(), cluster_distance(), color_change_transformer(), colormap_combine(), colormap_diversity(), colormap_image_floyd_steinberg(), colormap_image_posterize(), colormap_info(), colormap_median_cut(), column_to_vector(), combine_colormaps(), comblock(), comment_info(), compare_class(), compgoto_out(), Computebmatrix(), ComputeD0(), ComputeHpHm(), ComputeJ(), computeVM(), ComputeWtfactors(), COND_CopyText(), copy_data(), create_bucket(), create_colorindex(), create_colormap(), create_context_buffer(), create_image_data(), create_odither_tables(), create_out_global_map(), crunch(), csfft_nextup(), cubic_spline(), cumchn(), cumfnc(), cumnor(), dataval(), Daubechies_forward_pass_1d(), Daubechies_forward_pass_2d(), Daubechies_inverse_pass_1d(), Daubechies_inverse_pass_2d(), DC_color_bright(), DC_gray_change(), DC_gray_conbrio(), DC_gray_contrast(), DC_init_im_col(), DC_init_im_gry(), DC_palette_rotate(), DC_palette_swap(), DCM_ElementDictionary(), DCM_GroupDictionary(), DCM_ScanParseObject(), deallocate_arrays(), deallocate_pieces(), Decode(), DELAY_main(), DELAY_tsfuncV2(), delete_viewer(), detrend(), devlpl(), dim_finish(), dinvnr(), disp_comp_vect(), disp_vect(), Display_Notes(), distance(), dlnbet(), dlngam(), dmalloc_report(), do_barray_io(), do_colormap_change(), do_fio(), do_flip_v(), do_rot_180(), do_rot_270(), do_rot_90(), do_sarray_io(), do_transpose(), do_transverse(), do_ud(), docommon(), doequiv(), doReversibleTransformation(), doughnut(), draw_grids(), DRAW_ttatlas_CB(), drawBox(), drawGraf(), drawtriangle(), dt1(), DTtoDWI_tsfunc(), DWItoDT_tsfunc(), e_d(), edgeDetect(), EDIT_aver_fvol(), EDIT_filter_volume(), EIG_func(), EIG_tsfunc(), emit_dac(), emit_dht(), emit_dqt(), emit_sos(), Encode(), encode_one_block(), enddo(), endioctl(), ensure_slot_255(), equal_strings(), erase_screen(), eval_vertices(), exdo(), expand_array(), exportVRLength(), extension_info(), extract_index(), EXTRACT_tsfunc(), extract_xyz(), extrema_distance(), extrudeSolidFromPolygon(), f__icvt(), f__isdev(), f_back(), f_exit(), f_inqu(), f_mult(), fft(), fft128(), fft256(), fft512(), fft64(), fft_3dec(), fft_4dec(), fft_5dec(), file_byte_getter(), fileinit(), fill_array(), filter(), fim3d_fimmer_compute(), finalize_optimizer(), find_background(), find_best_colors(), find_biggest_color_pop(), find_biggest_volume(), find_element(), find_long(), find_nearby_colors(), find_prefix_opt(), find_property(), find_short(), findColormaps(), findServerOverlayVisualsInfo(), finish_string_list(), fix_entry_returns(), float_to_complex(), flush_(), fmt_init(), fold(), Form_R_Matrix(), forward_DCT(), forward_DCT_float(), Fourier_Filter_Driver(), frame_argument(), free2D(), FreeGlobals(), gamln(), generateEPS(), GenerateGrafFunc(), generateMTFValues(), get_color_table_size(), get_dht(), get_dqt(), get_interesting_appn(), get_intra_block_B14(), get_intra_block_B15(), get_mpeg1_intra_block(), get_mpeg1_non_intra_block(), get_non_intra_block(), get_options(), get_prop_type(), get_soi(), get_sos(), get_used_colors(), get_words(), getAndMoveToFrontDecode(), getarg_(), getcd(), getkwd(), getOverlayVisualInfoCI(), getRLEpair(), getShareableColormap(), gettok(), getUnusedMenuSlot(), getUnusedWindowSlot(), getVisualInfoCI(), Gif_AddColor(), Gif_CalculateScreenSize(), Gif_CopyColormap(), Gif_CopyImage(), Gif_CopyStreamImages(), Gif_DeleteComment(), Gif_DeleteStream(), Gif_FindColor(), Gif_GetNamedImage(), Gif_ImageNumber(), Gif_SetUncompressedImage(), Gif_Unoptimize(), Gif_XClaimStreamColors(), Gif_XSubMask(), globextend(), globfree(), glutChangeToMenuEntry(), glutChangeToSubMenu(), glutCopyColormap(), glutInit(), glutRemoveMenuItem(), glutSetColor(), glutStrokeCharacter(), GRA_drawing_EV(), GRA_overlay_circle(), GRA_small_circle(), GRAF_set_func(), gratio(), h_indx(), Haar_forward_pass_1d(), Haar_forward_pass_2d(), Haar_inverse_pass_1d(), Haar_inverse_pass_2d(), Haar_ip_FFWT_1d(), Haar_ip_IFWT_1d(), handle_args(), hanning(), hash_color(), hashclear(), hbAssignCodes(), hbCreateDecodeTables(), hbMakeCodeLengths(), highbit(), hilbertdelay_V2(), histogram(), i_indx(), icosahedron(), identify_repeats(), ifft(), ijk_invwarp(), ijkwarp(), increment_penalties(), init_fdct(), init_histogram(), init_indep_var_matrix(), init_mat(), InitGlobals(), initialize(), initialize_filters(), initialize_full_model(), initialize_optimizer(), initialize_options(), initialize_simplex(), initialize_slice_sequence(), initialize_state_history(), initkey(), InitSpline(), InitWtfactors(), input_stream(), inregister(), internal_draw_frame(), intrcall(), intrfunct(), InvertSym3(), iocname(), iosetip(), iosetlc(), ipmpar(), is_vect_null(), isarg(), jcopy_markers_execute(), jinit_2pass_quantizer(), jinit_c_coef_controller(), jinit_d_coef_controller(), jinit_forward_dct(), jinit_huff_decoder(), jinit_huff_encoder(), jinit_marker_reader(), jinit_phuff_decoder(), jinit_phuff_encoder(), jpeg_add_quant_table(), jpeg_CreateCompress(), jpeg_CreateDecompress(), jpeg_gen_optimal_table(), jpeg_make_c_derived_tbl(), jpeg_make_d_derived_tbl(), jpeg_set_defaults(), jpeg_suppress_tables(), l_CHAR(), l_read(), l_write(), Lagrange_interp(), linear_interp(), linear_reg(), list_print(), load_closest(), load_decode_table(), load_encode_table(), load_tmp_colors(), loadAndRLEsource(), lookupVRCode(), main(), make_funny_pointers(), make_one_const(), makeMaps(), map_vtou(), mapVRtoASCII(), mark_used_colors(), match_table(), matrix_add(), matrix_check_columns(), matrix_copy(), matrix_create(), matrix_destroy(), matrix_enter(), matrix_equate(), matrix_extract(), matrix_extract_rows(), matrix_file_read(), matrix_file_write(), matrix_identity(), matrix_inverse(), matrix_inverse_dsc(), matrix_multiply(), matrix_norm(), matrix_print(), matrix_scale(), matrix_singvals(), matrix_sqrt(), matrix_subtract(), matrix_sumabs(), matrix_transpose(), max_float(), maximum(), MCW_histo_bytes(), MCW_inverse_histogram_sh(), MD5Update(), mean_array(), menuVisualSetup(), merge_clusters(), merge_colormap_if_possible(), merge_comments(), merge_frame_interval(), merge_image(), merge_stream(), merger_flatten(), min_float(), minimum(), mkname(), mp_quant_block(), mp_quant_zig_block(), mp_rle_huff_block(), mp_rle_huff_pblock(), mpeg2_close(), mpeg2_header_sequence(), mpeg2_idct_add_c(), mpeg2_idct_copy_c(), mpeg2_idct_init(), mpeg2_set_fbuf(), mri_imcount_siemens(), mri_read_siemens(), mri_to_XImage(), mri_warp3d_align_one(), mri_watershedize(), mri_write_ascii(), my_log2(), neighborCount(), new_color_hash(), new_MCW_pbar(), new_viewer(), newarg(), NI_val_to_text(), noFaultXAllocColor(), normalize_quat(), notABogStandardFile(), octahedron(), output_frames(), output_information(), output_results(), p1comp_goto(), p1putds(), p1putn(), pad(), padd(), parse_bool(), parset_bilinear(), PBAR_resize_CB(), PDF_find_extrema(), permute_array(), Pfile(), pfit(), picture_display_ext(), pipe_color_transformer(), pixar_to_XImage(), plot_graphs(), ply_describe_element(), ply_describe_other_elements(), ply_describe_other_properties(), ply_element_count(), ply_get_element_description(), ply_get_element_setup(), ply_get_other_element(), ply_get_other_properties(), ply_header_complete(), ply_open_for_writing(), ply_put_element(), ply_put_other_elements(), ply_read(), ply_write(), poly_field(), powerof2(), ppmd_polyspline(), prepare_colormap(), prepare_colormap_map(), prepare_range_limit_table(), print_array(), print_cluster(), print_options(), print_usage(), print_useless_options(), probeDevices(), process_voxel(), procinit(), prolog(), psi(), Ptype(), pushctl(), put_sub_image_colormap(), putct1(), putentries(), qh_allstatistics(), qh_appendprint(), qh_backnormal(), qh_check_output(), qh_checkfacet(), qh_collectstatistics(), qh_compare_facetvisit(), qh_determinant(), qh_detsimplex(), qh_detvnorm(), qh_errprint(), qh_facetarea_simplex(), qh_facetintersect(), qh_findbestnew(), qh_gausselim(), qh_gethash(), qh_gram_schmidt(), qh_init_qhull_command(), qh_initbuild(), qh_initflags(), qh_initqhull_globals(), qh_initqhull_mem(), qh_initstatistics(), qh_intcompare(), qh_joggleinput(), qh_memsetup(), qh_memstatistics(), qh_newstats(), qh_nostatistic(), qh_option(), qh_partitionall(), qh_printbegin(), qh_printend4geom(), qh_printfacet3geom_points(), qh_printhelp_singular(), qh_printhyperplaneintersection(), qh_printmatrix(), qh_printstatistics(), qh_printstatlevel(), qh_produce_output(), qh_projectdim3(), qh_projectinput(), qh_projectpoints(), qh_randommatrix(), qh_rotatepoints(), qh_scalelast(), qh_scalepoints(), qh_setaddnth(), qh_setdelaunay(), qh_setfacetplane(), qh_sethalfspace_all(), qh_sethyperplane_det(), qh_setindex(), qh_voronoi_center(), qmed_float(), qsrec_double(), qsrec_doubleint(), qsrec_float(), qsrec_floatfloat(), qsrec_floatint(), qsrec_floatstuff(), qsrec_int(), qsrec_intint(), QSREC_NAME(), qsrec_pair(), qsrec_sh(), qsrec_short(), quant_matrix_ext(), queryTabletPos(), randomiseBlock(), rank_array(), rank_darray(), RCREND_setup_color_pbar(), rd_A(), rd_AW(), rd_H(), rd_Z(), rdname(), read_compressed_image(), read_gif_map(), read_image(), read_image_block(), read_image_data(), read_quant_tables(), read_table(), read_test(), readref(), recurseSelect(), recvDecodingTables(), redraw_MCW_pasgraf(), removeArgs(), REND_setup_color_pbar(), REORDER_parseMap(), replace(), reset_bigcolors(), resize_stream(), restart(), Restore_Computations(), rgb_ycc_start(), s_cat(), s_rnge(), s_stop(), save_argtypes(), save_cluster(), save_pgm(), scale_image(), segment_envelope(), select_colors(), select_ncolors(), send_serial(), sendMTFValues(), set_all_surf_vals(), set_bottom_pointers(), set_externs(), set_frame_change(), set_MCW_pasgraf(), set_new_fixed_colormap(), set_surf_results(), set_wraparound_pointers(), setbound(), setdata(), setimpl(), setup_other_props(), ShowHdr(), shuffle(), shuffle_array(), simpleSort(), simplex_initialize(), simplex_optimization(), sort_clusters(), sort_extrema(), sort_model_indices(), SortFiles(), sortIt(), spmpar(), sprint_array(), start_pass(), start_pass_1_quant(), start_pass_2_quant(), start_pass_fdctmgr(), startioctl(), Store_Computations(), subdivide(), subtract(), SUMA_add_node_ixyz(), SUMA_AddGenDsetColAttr(), SUMA_AddNelHist(), SUMA_AddNewPlane(), SUMA_AddNgrHist(), SUMA_AddNodeIndexColumn(), SUMA_Addto_ROIplane_List(), SUMA_AdvancePastNumbers(), SUMA_AFNI_forward_warp_xyz(), SUMA_AFNItlrc_toMNI(), SUMA_Align_to_VolPar(), SUMA_Alloc_Generic_Prog_Options_Struct(), SUMA_Alloc_OpenDX_Struct(), SUMA_Alloc_SurfaceViewer_Struct(), SUMA_Alloc_SurfObject_Struct(), SUMA_Alloc_ViewState(), SUMA_allocate2D(), SUMA_Allocate_SPI(), SUMA_AllocateROI(), SUMA_AppendToROIdatum(), SUMA_Apply_VolReg_Trans(), SUMA_ApplyAffine(), SUMA_AreaDiff(), SUMA_AssembleAllROIList(), SUMA_AssembleCmapList(), SUMA_AssembleColorPlaneList(), SUMA_AssembleGroupList(), SUMA_Assign_HostName(), SUMA_assignColors(), SUMA_AssignTriBranch(), SUMA_BestStandardView(), SUMA_binTesselate(), SUMA_BrainVoyager_Read(), SUMA_BrainVoyager_Read_vmr(), SUMA_BrushStrokeToNodeStroke(), SUMA_Build_Color_maps(), SUMA_Build_FirstNeighb(), SUMA_Build_Mask_AllROI(), SUMA_BuildMenu(), SUMA_CalcNeighbDist(), SUMA_CalculateNodeAreas(), SUMA_CanTalkToAfni(), SUMA_Cart2Sph(), SUMA_cb_createSumaCont(), SUMA_cb_search_text(), SUMA_cb_XHalock_toggled(), SUMA_cb_XHlock_toggled(), SUMA_cb_XHviewlock_toggled(), SUMA_cellvariety(), SUMA_CheckOnSpecFile(), SUMA_Chung_Smooth_Weights(), SUMA_ClusterCenterofMass(), SUMA_cmap_context_Init(), SUMA_Cmap_To_SO(), SUMA_Cmap_To_SO_old(), SUMA_cmap_wid_display(), SUMA_coarsen_ParseInput(), SUMA_Col2Float(), SUMA_ColLabelCopy(), SUMA_ColorizePlane(), SUMA_ColorMapVec_Info(), SUMA_ColorOverlayPlane_Info(), SUMA_ColorVec_Info(), SUMA_ColPlane_NewOrder(), SUMA_CommonFieldsInfo(), SUMA_ConvexHullSurface(), SUMA_Convexity_Engine(), SUMA_CoordChange(), SUMA_Copy_Part_Column(), SUMA_Create_1dData(), SUMA_Create_CommonFields(), SUMA_Create_CommSrtuct(), SUMA_createColGradient(), SUMA_CreateDrawROIWindow(), SUMA_CreateDsetPointer(), SUMA_CreateGenericArgParse(), SUMA_CreateIcosahedron(), SUMA_CreateOverlayPointer(), SUMA_CreatePromptActionArea(), SUMA_CreateScrolledList(), SUMA_CreateTable(), SUMA_DeleteROI(), SUMA_DestroyAfniColors(), SUMA_detWeight(), SUMA_Dijkstra(), SUMA_disp_dmat(), SUMA_disp_dvect(), SUMA_disp_mat(), SUMA_disp_vecdmat(), SUMA_disp_vecmat(), SUMA_disp_vect(), SUMA_disp_vecucmat(), SUMA_display(), SUMA_divEdge(), SUMA_dPoint_At_Distance(), SUMA_Draw_SO_ROI(), SUMA_DrawAxis(), SUMA_DrawBrushStroke(), SUMA_DrawCmap(), SUMA_DrawLineAxis(), SUMA_DrawMesh(), SUMA_DrawnROI_to_1DDrawROI(), SUMA_DrawnROI_to_NIMLDrawnROI(), SUMA_DrawSegmentDO(), SUMA_DsetCol2Float(), SUMA_DsetColLabelCopy(), SUMA_DsetInfo(), SUMA_EmptyColorList(), SUMA_Engine(), SUMA_EngineFieldString(), SUMA_EngineSourceString(), SUMA_EquateSurfaceAreas(), SUMA_EquateSurfaceSize(), SUMA_EquateSurfaceVolumes(), SUMA_existDO(), SUMA_existSO(), SUMA_FaceSet_Edge_Neighb(), SUMA_FakeIt(), SUMA_far2dset(), SUMA_Fetch_OverlayPointer(), SUMA_FetchROI_InCreation(), SUMA_FillColorList(), SUMA_FillToMask(), SUMA_FillToMask_Engine(), SUMA_FillToMask_Engine_old(), SUMA_FillToVoxelMask(), SUMA_Find_Color(), SUMA_Find_ColorMap(), SUMA_Find_Edge_Nhost(), SUMA_find_named_SOp_inDOv(), SUMA_Find_OpenDX_Object_Class(), SUMA_Find_OpenDX_Object_Name(), SUMA_Find_ROIonSO(), SUMA_Find_ROIrelatedtoSO(), SUMA_FindClusters(), SUMA_findSO_inDOv(), SUMA_findSOp_inDOv(), SUMA_FindVoxelsInSurface(), SUMA_FindVoxelsInSurface_SLOW(), SUMA_Flip_Color_Map(), SUMA_FlushPlaneNotInUse(), SUMA_FormNeighbOffset(), SUMA_FormSwitchCmapMenuVector(), SUMA_FormSwitchColMenuVector(), SUMA_free2D(), SUMA_Free_ColorMap(), SUMA_Free_CommonFields(), SUMA_Free_Displayable_Object_Vect(), SUMA_Free_getoffsets(), SUMA_free_NeighbOffset(), SUMA_Free_OpenDX_Struct(), SUMA_Free_OpenDX_StructVec(), SUMA_free_STB(), SUMA_Free_Surface_Object(), SUMA_Free_SurfaceViewer_Struct(), SUMA_Free_SurfaceViewer_Struct_Vect(), SUMA_FreeAssembleListStruct(), SUMA_FreeDset(), SUMA_FreeGenericArgParse(), SUMA_FreeM2M(), SUMA_FreeMenuVector(), SUMA_FreeSurfer_ReadBin_eng(), SUMA_FreeSurfer_WritePatch(), SUMA_FreeTableField(), SUMA_FreeVTI(), SUMA_FromToRotation(), SUMA_FS_ColorTable_Info(), SUMA_FS_Write(), SUMA_generateEPS(), SUMA_Get_AFNI_Default_Color_Maps(), SUMA_Get_isosurface_datasets(), SUMA_Get_NodeIncident(), SUMA_GetColIndex(), SUMA_GetColorList(), SUMA_GetContour(), SUMA_GetDO_Type(), SUMA_GetDsetColIndex(), SUMA_GetEyeAxis(), SUMA_GetLargestBackroundOrder(), SUMA_GetNextCommand(), SUMA_GetNodeIndex_FromNodeRow(), SUMA_GetNodeOverInd(), SUMA_GetNodeRow_FromNodeIndex(), SUMA_getoffsets(), SUMA_getPatch(), SUMA_GetSelectionLine(), SUMA_getShareableColormap_Eng(), SUMA_GetSmallestForegroundOrder(), SUMA_GimmeSomeSOs(), SUMA_HistString(), SUMA_Init_SurfCont_CrossHair(), SUMA_Init_SurfCont_SurfParam(), SUMA_Initialize_getoffsets(), SUMA_InitializeColPlaneShell(), SUMA_InitializeEngineListData(), SUMA_InitRangeTable(), SUMA_inNodeNeighb(), SUMA_input(), SUMA_IO_args_2_spec(), SUMA_iRGB_to_OverlayPointer(), SUMA_is_AllNumeric_dset(), SUMA_is_AllNumeric_nel(), SUMA_is_AllNumeric_ngr(), SUMA_isinpoly(), SUMA_isOverlayOfSO(), SUMA_isROIdequal(), SUMA_isVisibleSO(), SUMA_isVoxelIntersect_Triangle(), SUMA_iswordin(), SUMA_IV_FaceSetsextract(), SUMA_IV_XYZextract(), SUMA_Linearize_Color_Map(), SUMA_ListOrderToPlaneOrder(), SUMA_Load1DDset(), SUMA_Load_Spec_Surf(), SUMA_LoadDXDset(), SUMA_LoadPrepInVol(), SUMA_LoadSpec_eng(), SUMA_LockEnum_LockType(), SUMA_M2M_interpolate(), SUMA_M2M_node_Info(), SUMA_Make_Edge_List_eng(), SUMA_MakeColorMap(), SUMA_MakeColorMap_v2(), SUMA_MakeConsistent(), SUMA_MapRefRelative(), SUMA_MapSurface(), SUMA_MarchingCubesSurface(), SUMA_MaskDsetByClustList(), SUMA_MaskedCopyofDset(), SUMA_mattoquat(), SUMA_MemberFaceSets(), SUMA_Mesh_Area(), SUMA_Mesh_Volume(), SUMA_MixColors(), SUMA_MixOverlays(), SUMA_morphToStd(), SUMA_New_Additions(), SUMA_NewAreaAtRadius(), SUMA_NewGeometryInViewer(), SUMA_NewSurfaceGeometry(), SUMA_NewVolumeAtRadius(), SUMA_Next_Best_Seed(), SUMA_niml_hangup(), SUMA_NIMLDrawnROI_to_DrawnROI(), SUMA_NodeInput(), SUMA_NodePath_to_EdgePath(), SUMA_NodePath_to_TriPath_Inters(), SUMA_NodeStrokeToConnectedNodes(), SUMA_NodeVal2irgba_nel(), SUMA_oDsetNel2nDsetNgr(), SUMA_Offset_GeomSmooth(), SUMA_ok_orstring(), SUMA_OpenDrawnROI(), SUMA_OpenDrawnROI_1D(), SUMA_OpenDX2dset(), SUMA_OpenDx_Object_Attr(), SUMA_OpenDx_Object_Components(), SUMA_OpenDx_Object_Data(), SUMA_OpenDx_Object_Header_Field(), SUMA_OpenDX_Read(), SUMA_OpenDX_Read_CruiseVolHead(), SUMA_OpenDX_Read_SO(), SUMA_OpenGLStateReset(), SUMA_OrientTriangles(), SUMA_orstring_to_orcode(), SUMA_Overlays_2_GLCOLAR4(), SUMA_OverlaysToOrderedList(), SUMA_pad_str(), SUMA_Paint_SO_ROIplanes(), SUMA_Parse_IO_Args(), SUMA_Patch2Surf(), SUMA_Pattie_Volume(), SUMA_Ply_Read(), SUMA_Ply_Write(), SUMA_Point_At_Distance(), SUMA_Point_To_Line_Distance(), SUMA_Point_To_Point_Distance(), SUMA_PolySurf3(), SUMA_PrependToROIdatum(), SUMA_process_NIML_data(), SUMA_ProjectSurfaceToSphere(), SUMA_RangeTableCell_EV(), SUMA_read1D(), SUMA_Read_Color_Map_1D(), SUMA_Read_IRGB_file(), SUMA_Read_SpecFile(), SUMA_ReadCharStdin(), SUMA_readColor(), SUMA_readFSannot(), SUMA_readFScurv(), SUMA_ReadNumStdin(), SUMA_Recycle_getoffsets(), SUMA_RedisplayAllShowing(), SUMA_RefreshDsetList(), SUMA_RegisterCommand(), SUMA_RegisterDO(), SUMA_RegisteredSOs(), SUMA_RegisterEngineData(), SUMA_RegisterEngineListCommand(), SUMA_RegisterMessage(), SUMA_RegisterSpecSO(), SUMA_RemoveCoordBias(), SUMA_RemoveDO(), SUMA_RemoveSO_CoordBias(), SUMA_reorder(), SUMA_ReportDrawnROIDatumLength(), SUMA_ROIv2dataset(), SUMA_ROIv2Grpdataset(), SUMA_SampBias_ParseInput(), SUMA_ScaleToMap(), SUMA_ScaleToMap_alaAFNI(), SUMA_ScaleToMap_Interactive(), SUMA_set_Lock_arb(), SUMA_set_Lock_rb(), SUMA_set_LockView_atb(), SUMA_SetAllRemixFlag(), SUMA_SetCellEditMode(), SUMA_SetCmapMenuChoice(), SUMA_SetCoordBias(), SUMA_SetRangeTableTit_EV(), SUMA_SetRangeValue(), SUMA_SetRemixFlag(), SUMA_SetSO_CoordBias(), SUMA_Show_DOv(), SUMA_Show_Edge_List(), SUMA_Show_IO_args(), SUMA_Show_MT_intersect_triangle(), SUMA_Show_OpenDX_Struct(), SUMA_Show_SO_map(), SUMA_Show_SPI(), SUMA_show_STB(), SUMA_Show_SurfClust_list_Info(), SUMA_ShowBrushStroke(), SUMA_ShowDrawnROI(), SUMA_ShowDrawnROIDatum(), SUMA_ShowMemTrace(), SUMA_ShowMeSome(), SUMA_ShowPatch(), SUMA_SmoothAttr_Neighb_Rec(), SUMA_SOGroup_2_Spec(), SUMA_SortedAxisSegmentList(), SUMA_SOVolPar2VolPar_nel(), SUMA_SpecStructInfo(), SUMA_Sph2Cart(), SUMA_SphereQuality(), SUMA_SureFit_Read_Topo(), SUMA_SureFit_Write(), SUMA_Surf_Plane_Intersect(), SUMA_Surface_Curvature(), SUMA_SurfaceMetrics_eng(), SUMA_SurfaceObject_Info(), SUMA_SurfaceViewer_StructInfo(), SUMA_SurfClust_list_2_DsetMask(), SUMA_SurfNorm(), SUMA_SwitchGroups(), SUMA_SwitchState(), SUMA_Taubin_Smooth(), SUMA_Taubin_Smooth_Coef(), SUMA_Taubin_Smooth_TransferFunc(), SUMA_tesselate(), SUMA_TransferSO_CoordBias(), SUMA_triangulateRow(), SUMA_TriInput(), SUMA_TriNorm(), SUMA_TriSurf3(), SUMA_TriSurf3v(), SUMA_UnRegisterDO(), SUMA_UpdateAllViewerCursor(), SUMA_UpdateColPlaneShellAsNeeded(), SUMA_UpdateRotaCenter(), SUMA_UpdateViewerTitle(), SUMA_UpdateViewerTitle_old(), SUMA_UpdateViewPoint(), SUMA_UpdateXhairField(), SUMA_vec_3dfind_to_3dmm(), SUMA_vec_3dmm_to_3dfind(), SUMA_vec_3dmm_to_dicomm(), SUMA_vec_dicomm_to_3dmm(), SUMA_VEC_Write(), SUMA_ViewStateInfo(), SUMA_VisibleSOs(), SUMA_VolDiff(), SUMA_VoxelNeighbors(), SUMA_VoxelsInBox(), SUMA_which_stream_index(), SUMA_whichDO(), SUMA_WhichGroup(), SUMA_WhichState(), SUMA_WhichSV(), SUMA_whichTri(), SUMA_World2ScreenCoords(), SUMA_WorldAxisStandard(), SUMA_write1D(), SUMA_Write_DrawnROI_1D(), SUMA_Write_DrawnROI_NIML(), SUMA_writeColorFile(), SUMA_writeFSfile(), SUMA_writeSpecFile(), SUMA_XhairInput(), SumaToGts(), switch_animating(), tabletPosChange(), teapot(), terminate(), terminate_program(), tetrahedron(), THD_autonudge(), thd_complexscan(), THD_dataset_info(), THD_matrix_to_orientation(), tnonc_s2p(), transencode_coef_controller(), transpose_critical_parameters(), tross_datetime(), tross_Encode_String(), tross_Expand_String(), try_assign_transparency(), ts_fprint(), ts_loop(), ts_print(), Tune_Init(), typekludge(), undoReversibleTransformation_fast(), undoReversibleTransformation_small(), unmark_colors(), unmark_colors_2(), usage_3dBRAIN_VOYAGERtoAFNI(), usage_3dCRUISEtoAFNI(), usage_3dSurfMask(), usage_PROGRAM_NAME(), usage_SurfToSurf(), UTL_ConvertTimetoFloat(), UTL_IsDirectory(), UTL_VerifyCreatePath(), vcopy(), vector_add(), vector_create(), vector_create_noinit(), vector_dot(), vector_dotself(), vector_equate(), vector_multiply(), vector_multiply_subtract(), vector_print(), vector_subtract(), vector_to_array(), verifyFormat(), w_ed(), wanted(), warp3D_sharm2(), warp3D_sharm2_grad(), warp3D_sharm3(), warp3D_sharm3_grad(), warp_image(), warper_bilinear_det(), weight_extrema(), wr_char_len(), write_char_init(), write_color_table(), write_comment_extensions(), write_float(), write_gif(), write_one_ts(), write_parameter_vector(), write_results(), write_scan_header(), write_tables_only(), write_test(), write_typedefs(), writets(), wrt_AP(), wrt_E(), wrt_G(), wrt_H(), wrt_I(), wrt_IM(), wrt_L(), wrt_Z(), Xgamm(), xyz_to_ijk(), yuv2rgb_c_init(), yygrowstack(), zeromean(), and zzpsop_().

int i1
 

Definition at line 2468 of file FD2.c.

Referenced by AFNI_brick_to_mri(), AFNI_set_viewpoint(), bandr_(), cfft(), cmp_ints(), compute_face_vols(), csfft(), csfft_cox(), csfft_many(), csfft_print(), csfft_trigconsts(), ctcell_(), FFT_1dcx(), fullGtU(), minfit_(), mri_flippo(), mri_rgba_composite_two(), rebak_(), rebakb_(), reduc2_(), reduc_(), rot_to_shear(), rot_to_shear_matvec(), SUMA_FaceSet_Edge_Neighb(), SUMA_NodePath_to_TriPath_Inters_OLD(), SUMA_ScaleToMap(), SUMA_ScaleToMap_alaAFNI(), SUMA_swap_spec_entries(), svd_(), and THD_fetch_many_datasets().

int i2
 

Definition at line 2468 of file FD2.c.

Referenced by AFNI_brick_to_mri(), bandr_(), cfft(), cmp_ints(), compute_face_vols(), csfft(), csfft_cox(), csfft_many(), csfft_print(), csfft_trigconsts(), FFT_1dcx(), fullGtU(), mri_flippo(), mri_rgba_composite_two(), rot_to_shear(), rot_to_shear_matvec(), THD_fetch_many_datasets(), undoReversibleTransformation_fast(), and undoReversibleTransformation_small().

int I_lck = 0
 

Definition at line 507 of file FD2.c.

char I_name[STR_L]
 

Definition at line 520 of file FD2.c.

int i_plot[NF_MAX]
 

Definition at line 551 of file FD2.c.

int idx
 

Definition at line 541 of file FD2.c.

Referenced by DRAW_2D_circle(), DRAW_3D_sphere(), FFT_2dcx(), main(), MCW_build_mask(), SUMA_Show_OpenDX_Struct(), and updateSpecialElements().

int idy
 

Definition at line 541 of file FD2.c.

Referenced by FFT_2dcx(), and main().

int iHIGH
 

Definition at line 477 of file FD2.c.

int im1_done = 0
 

Definition at line 359 of file FD2.c.

int Im_1
 

Definition at line 359 of file FD2.c.

int Im_2
 

Definition at line 359 of file FD2.c.

int im_f
 

Definition at line 588 of file FD2.c.

int Im_frst = 0
 

Definition at line 521 of file FD2.c.

int Im_Nr = 0
 

Definition at line 507 of file FD2.c.

int im_size
 

Definition at line 546 of file FD2.c.

MRI_IMAGE* im_tmp_ar = NULL
 

Definition at line 42 of file FD2.c.

XImage * Image
 

Definition at line 3723 of file FD2.c.

Referenced by mri_to_XImage(), and pixar_to_XImage().

image
 

short int imx[IM_ARR]
 

Definition at line 510 of file FD2.c.

Referenced by ISQ_drawing_EV(), SUMA_read_ppm(), and SUMA_ShowMeSome().

int ind
 

Definition at line 7499 of file FD2.c.

Referenced by AFNI_func_overlay(), AFNI_receive_control(), AFNI_vnlist_func_overlay(), apply_image(), bisect_(), bratio(), erfc1(), FD_brick_to_series(), gratio(), imtqlv_(), ind_printf(), init_options(), main(), PBAR_bigmap_finalize(), ratqr_(), RCREND_xhair_recv(), SUMA_AttrOfDsetColNumb(), SUMA_coarsen_ParseInput(), SUMA_Col2Float(), SUMA_Convexity_Engine(), SUMA_DsetCol2Float(), SUMA_GetDsetValInCol(), SUMA_GetDsetValInCol2(), SUMA_GetValInCol(), SUMA_GetValInCol2(), SUMA_Parse_IO_Args(), SUMA_SampBias_ParseInput(), SUMA_TypeOfColNumb(), SUMA_TypeOfDsetColNumb(), THD_extract_array(), THD_extract_many_series(), THD_extract_series(), THD_insert_series(), tinvit_(), tridib_(), and write_indent().

int INgrey[NCOLORS]
 

Definition at line 495 of file FD2.c.

int invkey = -1
 

Definition at line 354 of file FD2.c.

ipx[]
 

Definition at line 2467 of file FD2.c.

Referenced by AFNI_crosshair_color_CB(), AFNI_crosshair_gap_CB(), AFNI_marks_disp_av_CB(), and AFNI_time_index_CB().

int iscale
 

Definition at line 535 of file FD2.c.

int isize
 

Definition at line 517 of file FD2.c.

int iWIDE
 

Definition at line 477 of file FD2.c.

int j
 

Definition at line 1555 of file vp_octree.c.

struct _key* key
 

Definition at line 198 of file FD2.c.

Referenced by addto_Htable(), AFNI_drive_open_window(), AFNI_receive_control(), drive_MCW_imseq(), findin_Htable(), hexcheck(), iochan_init(), ISQ_handle_keypress(), key_press(), main(), processEvents(), qh_checkflags(), qh_initflags(), qh_initthresholds(), removefrom_Htable(), shm_accept(), SHM_accept(), shm_create(), SHM_create(), and SHM_init().

char* key_kFFT_FFT = "FFT"
 

Definition at line 234 of file FD2.c.

char* key_kFFT_noFT = "noFT"
 

Definition at line 235 of file FD2.c.

char* key_kFI3[kFI3_NUM]
 

Initial value:

 { "ref =pixel ->" ,   
                             "ref+=pixel ->" ,
                             "smooth ref ->" ,
                             "thresh -+  ->" ,
                             "  NO FIM   ->" ,
                             "refplt -+  ->" ,
                             "save ref   ->" ,
                             "polort -+  ->" ,
                             "ort = ref  ->" ,
                             "clear orts ->" ,
                             "SubFit -+  ->"
                           }

Definition at line 293 of file FD2.c.

char* key_kFI3_help[kFI3_NUM]
 

Initial value:

 { "set reference function = central pixel" ,
                                  "add central pixel to reference function" ,
                                  "median (of 3) filter reference function" ,
                                  "- or + correlation coefficient threshold" ,
                                  "turn fimming off" ,
                                  "- or + number of reference function plots" ,
                                  "save reference function in a file" ,
                                  "- or + number of polynomial ort functions" ,
                                  "make current ref an ort instead" ,
                                  "clear all current ort functions" ,
                                  "set least squares removal in graphs"
                                }

Definition at line 306 of file FD2.c.

char* key_kFIM_FIM = "FIM"
 

Definition at line 253 of file FD2.c.

char* key_kFIM_GO = "GO!"
 

Definition at line 254 of file FD2.c.

char* key_kFT1[2] = {"edit", "end"}
 

Definition at line 236 of file FD2.c.

char* key_kFT2[4] = {" FT ", "0..0", "from", " to "}
 

Definition at line 237 of file FD2.c.

char* key_kFT3[3] = {" ", "i FT", "zero"}
 

Definition at line 238 of file FD2.c.

char* key_kROT_all = "Rot"
 

Definition at line 324 of file FD2.c.

char* key_kROT_one = "Rot1"
 

Definition at line 325 of file FD2.c.

Font keyfont
 

Definition at line 351 of file FD2.c.

int keyhigh
 

Definition at line 352 of file FD2.c.

Window keyW
 

Definition at line 5819 of file FD2.c.

int keywide[N_KEYS]
 

Definition at line 352 of file FD2.c.

int kFI3_refsum_count = 0
 

Definition at line 321 of file FD2.c.

int kFI3_show_ref = 1
 

Definition at line 320 of file FD2.c.

int kFI3_status = -1
 

Definition at line 319 of file FD2.c.

char* kfont
 

Definition at line 347 of file FD2.c.

XFontStruct* kfontinfo
 

Definition at line 350 of file FD2.c.

int kROT_doall = 1
 

Definition at line 323 of file FD2.c.

int LSQ_code = LSQ_NONE [static]
 

Definition at line 285 of file FD2.c.

char* LSQ_fimcode[LSQ_LASTCODE+1] [static]
 

Initial value:

 { " " , "SUB:ort" , "SUB:all" , "FIT:ort" , "FIT:all" ,"SUB:ort FIT:ideal"}

Definition at line 283 of file FD2.c.

float* LSQ_fit[MAX_TOTAL_REF] [static]
 

Definition at line 289 of file FD2.c.

MRI_IMARR* LSQ_fitim = NULL [static]
 

Definition at line 288 of file FD2.c.

int LSQ_imedit[LSQ_LASTCODE+1] [static]
 

Initial value:

Definition at line 281 of file FD2.c.

int * LSQ_plot
 

Definition at line 531 of file FD2.c.

time_series* LSQ_ref[MAX_TOTAL_REF] [static]
 

Definition at line 287 of file FD2.c.

int LSQ_refcount = 0 [static]
 

Definition at line 286 of file FD2.c.

int* LSQ_val
 

Definition at line 531 of file FD2.c.

int mark
 

Definition at line 533 of file FD2.c.

Referenced by emit_marker().

int mat
 

Definition at line 533 of file FD2.c.

Referenced by AFNI_drive_open_window(), draw_grids(), GRA_drawing_EV(), main(), r_idisp_mat33d(), r_idisp_mat33f(), and SUMA_mattoquat().

int max_xlines = 0
 

Definition at line 502 of file FD2.c.

XColor* mc
 

Definition at line 7644 of file FD2.c.

Referenced by get_options(), HI_read_opts(), main(), PC_read_opts(), putio(), read_input_data(), and THD_countmask().

int mdx1
 

Definition at line 542 of file FD2.c.

int mdy1
 

Definition at line 542 of file FD2.c.

XFontStruct * mfinfo
 

Definition at line 474 of file FD2.c.

Referenced by MCW_new_DC().

Font mfont
 

Definition at line 473 of file FD2.c.

int min1
 

Definition at line 516 of file FD2.c.

int minwide
 

Definition at line 352 of file FD2.c.

int Mltx[MAX_WIDTH]
 

Definition at line 512 of file FD2.c.

int Mlty[MAX_WIDTH]
 

Definition at line 512 of file FD2.c.

mod
 

Definition at line 5631 of file FD2.c.

Referenced by plot_fdX().

int move_Vpointer = 0
 

Definition at line 358 of file FD2.c.

int my
 

Definition at line 644 of file subsample.c.

XColor MYcol[NCOLORS]
 

Definition at line 496 of file FD2.c.

XColor MYgrey[NCOLORS]
 

Definition at line 496 of file FD2.c.

int mytxt
 

Definition at line 541 of file FD2.c.

int N_im = 0
 

Definition at line 507 of file FD2.c.

int N_lck = 0
 

Definition at line 508 of file FD2.c.

char* name
 

Definition at line 6182 of file FD2.c.

Referenced by AFNI_get_friend(), AFNI_imag_pop_CB(), AFNI_plugout_workproc(), AFNI_register_nD_function(), autovar(), call0(), call1(), call2(), call3(), call4(), callk(), check_mod_type(), Clp_AddStringListType(), compress(), containsDubiousChars(), DC_add_overlay_color(), DCM_OpenFile(), do_ncdump(), doinclude(), DRAW_make_widgets(), Dtable_to_nimlstring(), endsInBz2(), excall(), explode_filename(), fileExists(), find_graph_xy_name(), get_input_stream(), get_siemens_extra_info(), Gif_GetNamedImage(), handle_args(), inilex(), input_stream(), iochan_init(), L1F_worker(), LSQ_worker(), main(), match(), MCW_choose_timeseries(), mri_read_many_nsize(), mri_read_nsize(), NC_check_name(), nc_copy_att(), nc_def_dim(), nc_def_var(), nc_del_att(), NC_findattr(), NC_finddim(), NC_findvar(), nc_get_att(), nc_get_att_double(), nc_get_att_float(), nc_get_att_int(), nc_get_att_long(), nc_get_att_schar(), nc_get_att_short(), nc_get_att_text(), nc_get_att_uchar(), nc_inq_att(), nc_inq_attid(), nc_inq_attlen(), nc_inq_attname(), nc_inq_atttype(), nc_inq_dim(), nc_inq_dimid(), nc_inq_dimname(), nc_inq_var(), nc_inq_varid(), nc_inq_varname(), NC_lookupattr(), nc_put_att(), nc_put_att_double(), nc_put_att_float(), nc_put_att_int(), nc_put_att_long(), nc_put_att_schar(), nc_put_att_short(), nc_put_att_text(), nc_put_att_uchar(), nc_rename_att(), ncattcopy(), ncattdel(), ncattget(), ncattinq(), ncattname(), ncattput(), ncattrename(), ncdimdef(), ncdimid(), ncdiminq(), ncdimrename(), ncvardef(), ncvarid(), ncvarinq(), ncvarrename(), new_iob_data(), new_NC_attr(), new_NC_dim(), new_NC_var(), new_viewer(), new_x_NC_dim(), next_viewer(), NI_new_data_element(), NI_new_processing_instruction(), NI_registry_add(), NI_registry_malloc(), NI_stream_open(), niml_to_symvec(), notABogStandardFile(), oneof_stg(), open_MCW_imseq(), openDataset(), p1_head(), PBAR_add_bigmap(), PBAR_define_bigmap(), PBAR_make_bigmap(), PBAR_read_bigmap(), ply_get_element_setup(), ply_open_for_reading(), ply_open_for_writing(), print_usage(), rdname(), read_colormap_file(), read_input_data(), read_test(), read_text_colormap(), readData(), readFile(), readFile1(), readGroupElement(), readPreamble(), readSequence(), readVRLength(), remapFileName(), RT_find_value(), RT_number_array(), RWC_getname(), scanCompressedPixels(), set_new_fixed_colormap(), set_URL_ftp_ident(), SFIM_load_intervals(), SFIM_write_avs(), SHM_init(), snocString(), SUMA_AfniPrefix(), SUMA_Load1DDset(), SUMA_LoadDXDset(), SUMA_Ply_Read(), SUMA_spec_select_surfs(), SYM_expand_ranges(), testf(), THD_erase_one_atr(), THD_filename_ok(), THD_filename_pure(), THD_find_atr(), THD_find_float_atr(), THD_find_int_atr(), THD_find_string_atr(), THD_set_char_atr(), THD_set_float_atr(), THD_set_int_atr(), TTRR_load_file(), TTRR_save_CB(), TTRR_setup_widgets(), uncompress(), verbose_open(), wr_abbrevs(), and wr_one_init().

int nc
 

Definition at line 7752 of file FD2.c.

Referenced by color_quantize(), DC_color_bright(), DC_gray_change(), DC_gray_conbrio(), DC_gray_contrast(), DC_init_im_col(), DC_init_im_gry(), DC_palette_rotate(), DC_palette_swap(), DC_set_image_colors(), extract_assign_directions(), extract_byte_fs(), extract_byte_liby(), extract_byte_lifl(), extract_byte_lix(), extract_byte_lixx(), extract_byte_nn(), extract_byte_speedtest(), extract_byte_ts(), extract_byte_tsx(), extract_rgba_nn(), find_color_index(), getplane_byte(), init_histogram(), load_tmp_colors(), main(), mcw_load(), null_convert(), pipe_color_transformer(), ppmd_polyspline(), putplane_byte(), quantize_fs_dither(), quantize_ord_dither(), RCREND_axis_rotmatrix(), REND_init_cmap(), ROIPLOT_main(), RT_start_dataset(), s_cat(), select_ncolors(), studave_t2p(), studave_t2z(), SUMA_ClusterCenterofMass(), SUMA_disp_dmat(), SUMA_disp_mat(), SUMA_disp_vecdmat(), SUMA_disp_vecmat(), SUMA_disp_vecucmat(), SUMA_dqsortrow(), SUMA_FindClusters(), SUMA_fqsortrow(), SUMA_GetStandardMap(), SUMA_NodePath_to_TriPath_Inters(), SUMA_ReadCharStdin(), swaptest(), TAG_columnize(), THD_average_timeseries(), and tross_multi_Append_History().

int NC
 

Definition at line 518 of file FD2.c.

int nc_option = 0
 

Definition at line 519 of file FD2.c.

int ncolors
 

Definition at line 495 of file FD2.c.

Referenced by add_map_entry(), find_nearby_colors(), and make_odither_array().

int No_Color_init = 1
 

Definition at line 493 of file FD2.c.

int No_Grey_init = 1
 

Definition at line 493 of file FD2.c.

short* nowim = NULL
 

Definition at line 46 of file FD2.c.

int nowsize
 

Definition at line 47 of file FD2.c.

unsigned int nplmsk = 0
 

Definition at line 499 of file FD2.c.

Referenced by DC_add_overlay_color(), and MCW_new_DC().

int npoints
 

Definition at line 535 of file FD2.c.

int nr
 

Definition at line 7623 of file FD2.c.

Referenced by AFNI_process_environ(), AFNI_process_setup(), AFNI_rescan_session_NEW(), DRAW_make_widgets(), find_unusual_correlations(), free_PCOR_references(), PCOR_get_coef(), PCOR_get_lsqfit(), PCOR_get_mcor(), PCOR_get_pcor(), PCOR_get_pcor_and_coef(), PCOR_get_perc(), PCOR_get_variance(), PCOR_UPDATE(), quadrant_manycorr(), read_glt_matrix(), segment_envelope(), spearman_rank_manycorr(), SUMA_disp_dmat(), SUMA_disp_mat(), SUMA_disp_vecdmat(), SUMA_disp_vecmat(), SUMA_disp_vecucmat(), SUMA_dqsortrow(), SUMA_fqsortrow(), SUMA_isinbox(), SUMA_isinsphere(), SUMA_SmoothAttr_Neighb(), SUMA_SmoothAttr_Neighb_Rec(), SUMA_SphereQuality(), unusuality(), and update_PCOR_references().

int nshade
 

Definition at line 2468 of file FD2.c.

int offs
 

Definition at line 546 of file FD2.c.

int old_grid
 

Definition at line 508 of file FD2.c.

int old_im = -1
 

Definition at line 508 of file FD2.c.

BitBucket * out
 

Definition at line 489 of file postdct.c.

char pfname[80]
 

Definition at line 537 of file FD2.c.

int phase = 0
 

Definition at line 588 of file FD2.c.

Referenced by RIC_CalcCoeffAB(), RIC_CorrectDataset(), and RIC_ToCardiacPhase().

unsigned long pixels[MCOLORS]
 

Definition at line 498 of file FD2.c.

Referenced by allocate_colors(), associateNewColormap(), create_x_colormap_extension(), generateEPS(), Gif_XClaimStreamColors(), ppmd_circle(), ppmd_filledrectangle(), ppmd_line(), ppmd_polyspline(), ppmd_spline3(), ppmd_text(), put_sub_image_colormap(), SUMA_cmap_wid_input(), SUMA_display(), SUMA_generateEPS(), and SUMA_input().

unsigned long plane_masks[1]
 

Definition at line 498 of file FD2.c.

Referenced by DC_add_overlay_color(), and MCW_new_DC().

int Planes
 

Definition at line 494 of file FD2.c.

int* plot[MAT_MAX][MAT_MAX]
 

Definition at line 530 of file FD2.c.

char plotbuf[10*NF_MAX]
 

Definition at line 537 of file FD2.c.

int pmax[MAT_MAX][MAT_MAX]
 

Definition at line 533 of file FD2.c.

Referenced by AFNI_drive_set_pbar_all(), AFNI_drive_set_pbar_number(), AFNI_inten_av_CB(), AFNI_inten_bbox_CB(), AFNI_pbar_CB(), AFNI_set_pbar_top_CB(), alter_MCW_pbar(), analyze_results(), main(), MCW_pbar_to_mri(), new_MCW_pbar(), nlfit(), PBAR_resize_CB(), RCREND_color_bbox_CB(), RCREND_colornum_av_CB(), RCREND_func_widgets(), RCREND_pbarmenu_CB(), RCREND_set_pbar_top_CB(), REND_func_widgets(), REND_pbarmenu_CB(), REND_set_pbar_top_CB(), report_results(), and save_results().

int pmin[MAT_MAX][MAT_MAX]
 

Definition at line 533 of file FD2.c.

Referenced by AFNI_drive_set_pbar_all(), AFNI_drive_set_pbar_number(), AFNI_inten_av_CB(), AFNI_inten_bbox_CB(), AFNI_pbar_CB(), AFNI_set_pbar_top_CB(), alter_MCW_pbar(), MCW_pbar_to_mri(), new_MCW_pbar(), PBAR_resize_CB(), RCREND_color_bbox_CB(), RCREND_colornum_av_CB(), RCREND_func_widgets(), RCREND_pbarmenu_CB(), REND_func_widgets(), and REND_pbarmenu_CB().

char* ProgramName = NULL
 

Definition at line 459 of file FD2.c.

char ** ptr
 

Definition at line 461 of file FD2.c.

Pixmap pxWind
 

Definition at line 500 of file FD2.c.

complex* r_arr = NULL
 

Definition at line 568 of file FD2.c.

int RCR_swap = 0
 

Definition at line 64 of file FD2.c.

void redraw
 

Definition at line 401 of file SUMA_glxdino.c.

00402 {
00403    glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT);
00404   glCallList(DINOSAUR);
00405   if (doubleBuffer)
00406     glXSwapBuffers(dpy, win);
00407   else
00408     glFlush();
00409 }

int ref_ar[H_SIZE]
 

Definition at line 509 of file FD2.c.

int ref_undo = -1
 

Definition at line 586 of file FD2.c.

int repeat_status = 0
 

Definition at line 495 of file FD2.c.

XColor rgb_col
 

Definition at line 496 of file FD2.c.

Referenced by DC_fg_colortext().

Window rootW
 

Definition at line 470 of file FD2.c.

short int rot_direct
 

Definition at line 356 of file FD2.c.

short int rot_nr = 0
 

Definition at line 356 of file FD2.c.

short int rot_state
 

Definition at line 356 of file FD2.c.

MRI_IMAGE * RWC_alpim = NULL
 

Definition at line 56 of file FD2.c.

int RWC_autoscale = 0
 

Definition at line 58 of file FD2.c.

int RWC_checker = 0
 

Definition at line 61 of file FD2.c.

int RWC_framehide = 0
 

Definition at line 60 of file FD2.c.

int RWC_groupbase = 0
 

Definition at line 62 of file FD2.c.

int RWC_GX_MAX = GX_MAX
 

Definition at line 160 of file FD2.c.

int RWC_GY_MAX = GY_MAX
 

Definition at line 161 of file FD2.c.

int RWC_overhide = 0
 

Definition at line 59 of file FD2.c.

MRI_IMAGE* RWC_pcim = NULL
 

Definition at line 56 of file FD2.c.

unsigned int shape
 

Definition at line 3207 of file FD2.c.

Referenced by cdfgam(), gamma_p2t(), and gamma_t2p().

XPoint sm_cir[12]
 

Initial value:

 { {-1,-2},{ 0,-2}, { 1,-2},  
                               { 2,-1},{ 2, 0}, { 2, 1},
                               { 1, 2},{ 0, 2}, {-1, 2},
                               {-2, 1},{-2, 0}, {-2,-1} }

Definition at line 454 of file FD2.c.

struct S_16_c Solid_color[16]
 

Initial value:

 {
   {0xffff, 0xffff, 0xffff}, {0xffff, 0x0000, 0x0000},   
   {0x0000, 0xffff, 0x0000}, {0x0000, 0x0000, 0xffff},   
   {0x0000, 0xffff, 0xffff}, {0xffff, 0x0000, 0xd3d3},   
   {0xffff, 0xffff, 0x0000}, {0xffff, 0x8a8a, 0xffff},   
   {0x0000, 0x7000, 0x0fff}, {0x0000, 0xffff, 0x9f9f},   
   {0x0000, 0x8a8a, 0xffff}, {0x9494, 0x0000, 0xd3d3},   
   {0xffff, 0x0000, 0x9494}, {0x6969, 0x6969, 0x6969},   
   {0xaeae, 0xaeae, 0xaeae}, {0x0000, 0x0000, 0x0000}    
  }

Definition at line 440 of file FD2.c.

int spectrum = N_SPCTR
 

Definition at line 506 of file FD2.c.

int SQUE_NR
 

Definition at line 463 of file FD2.c.

int st_2[]
 

Initial value:

 { 1, 2, 1, 0,
                  2, 4, 2, 0,
                  1, 2, 1, 0,
                  0, 0, 0, 0 }

Definition at line 430 of file FD2.c.

int st_4[]
 

Initial value:

 { 1,  2,  3,  4,  3,  2,  1,  0,      
                  2,  4,  6,  8,  6,  4,  2,  0,
                  3,  6,  9, 12,  9,  6,  3,  0,
                  4,  8, 12, 16, 12,  8,  4,  0,
                  3,  6,  9, 12,  9,  6,  3,  0,
                  2,  4,  6,  8,  6,  4,  2,  0,
                  1,  2,  3,  4,  3,  2,  1,  0,
                  0,  0,  0,  0,  0,  0,  0,  0 }

Definition at line 422 of file FD2.c.

int st_8[]
 

Initial value:

 {
     1,  2,  3,  4,  5,  6,  7,  8,  7,  6,  5,  4,  3,  2,  1,  0,
     2,  4,  6,  8, 10, 12, 14, 16, 14, 12, 10,  8,  6,  4,  2,  0,
     3,  6,  9, 12, 15, 18, 21, 24, 21, 18, 15, 12,  9,  6,  3,  0,
     4,  8, 12, 16, 20, 24, 28, 32, 28, 24, 20, 16, 12,  8,  4,  0,
     5, 10, 15, 20, 25, 30, 35, 40, 35, 30, 25, 20, 15, 10,  5,  0,
     6, 12, 18, 24, 30, 36, 42, 48, 42, 36, 30, 24, 18, 12,  6,  0,
     7, 14, 21, 28, 35, 42, 49, 56, 49, 42, 35, 28, 21, 14,  7,  0,
     8, 16, 24, 32, 40, 48, 56, 64, 56, 48, 40, 32, 24, 16,  8,  0,
     7, 14, 21, 28, 35, 42, 49, 56, 49, 42, 35, 28, 21, 14,  7,  0,
     6, 12, 18, 24, 30, 36, 42, 48, 42, 36, 30, 24, 18, 12,  6,  0,
     5, 10, 15, 20, 25, 30, 35, 40, 35, 30, 25, 20, 15, 10,  5,  0,
     4,  8, 12, 16, 20, 24, 28, 32, 28, 24, 20, 16, 12,  8,  4,  0,
     3,  6,  9, 12, 15, 18, 21, 24, 21, 18, 15, 12,  9,  6,  3,  0,
     2,  4,  6,  8, 10, 12, 14, 16, 14, 12, 10,  8,  6,  4,  2,  0,
     1,  2,  3,  4,  5,  6,  7,  8,  7,  6,  5,  4,  3,  2,  1,  0,
     0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0,  0 }

Definition at line 404 of file FD2.c.

int STD_indx[NUM_STD_COLORS + MAX_EXTRA_COLORS]
 

Definition at line 617 of file FD2.c.

char * str
 

Definition at line 5675 of file FD2.c.

int str_l
 

Definition at line 6183 of file FD2.c.

char strF[STR_L]
 

Definition at line 543 of file FD2.c.

char strp[STR_L]
 

Definition at line 543 of file FD2.c.

Referenced by GRA_redraw_overlay(), new_NC_attr(), new_NC_dim(), new_NC_var(), new_x_NC_attr(), new_x_NC_var(), putconst(), redraw_graph(), SUMA_pad_str(), text_graphs(), v1h_get_NC_attr(), and v1h_get_NC_var().

char strT[STR_L]
 

Definition at line 543 of file FD2.c.

int sub_W_x
 

Definition at line 357 of file FD2.c.

int sub_W_y
 

Definition at line 357 of file FD2.c.

Window subWindow
 

Definition at line 470 of file FD2.c.

MRI_IMAGE** t_allim = NULL
 

Definition at line 40 of file FD2.c.

float t_coef1
 

Definition at line 565 of file FD2.c.

int t_min1
 

Definition at line 566 of file FD2.c.

int t_N_im
 

Definition at line 564 of file FD2.c.

char T_name[STR_L]
 

Definition at line 520 of file FD2.c.

int t_points
 

Definition at line 564 of file FD2.c.

float* T_ref
 

Definition at line 591 of file FD2.c.

char * text
 

Definition at line 6182 of file FD2.c.

char* tfont [static]
 

Definition at line 179 of file FD2.c.

char * tfont_hopefuls[] [static]
 

Initial value:

 {
               "filled-in-by-default" ,
               "lucidasanstypewriter-10" ,
               "-adobe-courier-medium-r-normal--12-120-75-75-m-70-iso8859-1" ,
               "-misc-fixed-medium-r-normal--13-100-100-100-c-70-iso8859-1" ,
               "7x14" , "6x13" , "vtsingle" , "fixed" ,
               NULL }

Definition at line 180 of file FD2.c.

XImage * theBelt
 

Definition at line 476 of file FD2.c.

Display* theDisp
 

Definition at line 468 of file FD2.c.

GC theGC
 

Definition at line 471 of file FD2.c.

XImage* theImage
 

Definition at line 476 of file FD2.c.

int theScreen
 

Definition at line 469 of file FD2.c.

Visual* theVisual
 

Definition at line 475 of file FD2.c.

Window theWindow
 

Definition at line 470 of file FD2.c.

unsigned short tmp1[NCOLORS]
 

Definition at line 492 of file FD2.c.

unsigned short tmp2[NCOLORS]
 

Definition at line 492 of file FD2.c.

unsigned short tmp3[NCOLORS]
 

Definition at line 492 of file FD2.c.

short* tmp_ar = NULL
 

Definition at line 43 of file FD2.c.

short int tmp_imx[IM_ARR]
 

Definition at line 510 of file FD2.c.

int tmp_Nr = 0
 

Definition at line 507 of file FD2.c.

int top_W_x
 

Definition at line 357 of file FD2.c.

int top_W_y
 

Definition at line 357 of file FD2.c.

Window topW
 

Definition at line 6177 of file FD2.c.

Window topWindow
 

Definition at line 470 of file FD2.c.

GC txtGC
 

Definition at line 6179 of file FD2.c.

int txtW_ON = 0
 

Definition at line 362 of file FD2.c.

unsigned int ucolors
 

Definition at line 499 of file FD2.c.

struct _undo_buf* undo_buf = NULL
 

Definition at line 584 of file FD2.c.

struct _undo_buf* undo_ref = NULL
 

Definition at line 585 of file FD2.c.

int use_pixmap = 1
 

Definition at line 503 of file FD2.c.

unsigned int uucolors
 

Definition at line 499 of file FD2.c.

int v_point_x = -20
 

Definition at line 358 of file FD2.c.

int v_point_y = 0
 

Definition at line 358 of file FD2.c.

int * val[MAT_MAX][MAT_MAX]
 

Definition at line 530 of file FD2.c.

XEvent w_event
 

Definition at line 466 of file FD2.c.

Window Wind
 

Definition at line 3206 of file FD2.c.

x
 

int x00 = 0
 

Definition at line 464 of file FD2.c.

Referenced by gratio(), mpeg2_parse(), and mpeg2_parse_header().

int x1
 

Definition at line 593 of file vp_extract.c.

int x2
 

Definition at line 2468 of file FD2.c.

Referenced by AFNI_3d_linefill(), algdiv(), bcorr(), calcWithOffsets(), clip_line_to_rect(), clip_memplot(), create_row(), dct8(), draw_image_line(), DRAW_ttatlas_CB(), draw_xseg(), drawtriangle(), EDIT_opts(), erf1(), fd_line(), fdct8(), flip_memplot(), GenerateGrafFunc(), get_quadratic_trend(), getdimen(), idct8(), ifdct8(), ISQ_cropper(), line_(), linear_interp(), main(), memplot_to_postscript(), memplot_to_RGB_sef(), memplot_to_X11_sef(), mp_rle_huff_block(), mp_rle_huff_pblock(), phline_(), plotline_memplot(), plotpak_line(), plotpak_phline(), plotpak_unphys(), plotpak_zzphys(), plotrect_memplot(), ppmd_spline3(), ps_arc(), ps_rect(), RWC_drag_rectangle(), RWC_draw_rect(), setw_(), SUMA_binTesselate(), THD_autonudge(), zzaxxx_(), zzclip_(), zzline_(), zzlinx_(), zzlogx_(), zzmpli_(), and zzphph_().

int x_mag
 

Definition at line 509 of file FD2.c.

int xc
 

Definition at line 533 of file FD2.c.

Referenced by AGNI_nod_to_NIML_col(), AGNI_nod_to_NIML_rows(), betasolve(), BFIT_compute(), BFIT_main(), bi7func(), csfft(), csfft_cox(), csfft_many(), csfft_print(), DC_color_bright(), DC_gray_change(), DC_gray_conbrio(), DC_gray_contrast(), DC_palette_rotate(), DC_palette_swap(), DC_set_image_colors(), DCpix_to_XColor(), draw_grids(), fft128(), fft16(), fft256(), fft32(), fft512(), fft64(), fft8(), FFT_1dcx(), FFT_2dchirpz(), fft_3dec(), fft_4dec(), fft_5dec(), float_to_complex(), GRA_draw_circle(), ISQ_saver_CB(), main(), mri_read_dicom(), NIML_to_SUMA_ixyz(), ppmd_polyspline(), ppmd_spline3(), process_NIML_SUMA_ixyz(), process_NIML_SUMA_node_normals(), r_mri_read_dicom(), redraw_graph(), RT_process_info(), RWC_draw_circle(), SUMA_ixyz_to_NIML(), SUMA_ixyzsort_surface(), SUMA_makeNI_SurfINORM(), SUMA_makeNI_SurfIXYZ(), and XImage_to_mri().

XColor xced
 

Definition at line 349 of file FD2.c.

XColor xcsd
 

Definition at line 349 of file FD2.c.

char* Xdef_Name = "FD"
 

Definition at line 460 of file FD2.c.

int xorigin[MAT_MAX][MAT_MAX]
 

Definition at line 534 of file FD2.c.

int xpoint
 

Definition at line 535 of file FD2.c.

int xpoint_0 = -1
 

Definition at line 538 of file FD2.c.

int xspace
 

Definition at line 536 of file FD2.c.

Referenced by THD_open_minc().

struct _key xtkeys[N_KEYS]
 

Initial value:

 { {"Rot"  , kROT, Ims_rot},
                               {"Help" , kHLP, Im_help},
                               {"AvIm" , kAVR, Im_Aver},
                               {"Diff" , kDIF, Im_diff},
                               {"Smth" , kSIG, Smooth_line},
                               {"FFT"  , kFFT, FFT_action} ,
                               {"FIM"  , kFIM, FIM_action} ,
                               {"Norm" , kNRM, Im_norm},
                               {"Average: from this image" , kAV1 , Av_im1},
                               {"Average: to this one.   " , kAV2 , Av_im2},
                               {"Ref. level first image"   , kIR1 , Ref_im1},
                               {"Ref. level last  image"   , kIR1 , Ref_im2},
                               {"set threshold"  , kFI1 , FIM_selection},
                               {"ref/ort file "  , kFI2 , FIM_selection},
                               {"PUSH BUTTON 3"  , kFI3 , FIM_selection},
                               {"edit", kFT1 , FFT_selection},
                               {" FT ", kFT2 , FFT_selection},
                               {"    ", kFT3 , FFT_selection}
                             }

Definition at line 327 of file FD2.c.

int y
 

Definition at line 472 of file vp_extract.c.

int y00 = 0
 

Definition at line 464 of file FD2.c.

int yc
 

Definition at line 533 of file FD2.c.

Referenced by AGNI_nod_to_NIML_col(), AGNI_nod_to_NIML_rows(), clear_around_point(), draw_grids(), FFT_2dchirpz(), GRA_draw_circle(), mri_read_dicom(), NIML_to_SUMA_ixyz(), ppmd_polyspline(), ppmd_spline3(), process_NIML_SUMA_ixyz(), process_NIML_SUMA_node_normals(), r_mri_read_dicom(), radial_fill(), redraw_graph(), RT_process_info(), RWC_draw_circle(), SUMA_ixyz_to_NIML(), SUMA_ixyzsort_surface(), SUMA_makeNI_SurfINORM(), and SUMA_makeNI_SurfIXYZ().

int YES_color = 0
 

Definition at line 495 of file FD2.c.

int yorigin[MAT_MAX][MAT_MAX]
 

Definition at line 534 of file FD2.c.

int ypoint
 

Definition at line 535 of file FD2.c.

int ypoint_0 = -1
 

Definition at line 538 of file FD2.c.

ys
 

Definition at line 4218 of file FD2.c.

Referenced by SUMA_UniqueInt_ind().

int yspace
 

Definition at line 536 of file FD2.c.

Referenced by THD_open_minc().

int z_im1 = 0
 

Definition at line 233 of file FD2.c.

int z_imL = 0
 

Definition at line 233 of file FD2.c.

 

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