AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Jim Eliassen
January 31, 2003 09:41AM
Hi Bob and All,

In an effort to find ways to improve the processing speed of our lengthly deconvolutions, we've run into another possibility, and I am looking for some advice or an expert opinion. We have several Mac PowerPC G4's with the Motorola AltiVec processor (a.k.a Velocity Engine). My simple understanding of the AltiVec is that it contains four additional floating point processors. Do you think that getting AFNI to take advantage of this hardware, could be as simple as us using an AltiVec sensitive compiler on the current AFNI source code, say from Veridian (http://www.psrv.com/)? Alternatively, would we need to include special code or modify existing code to take advantage of AltiVec?

We've successfully run AFNI with the G4, but didn't get as much of a bump in speed as hoped. An 8 hour job on a 200MHz SGI Origin 2000 took 5 hours on the 1GHz G4.

The reason this seems to be such an interesting possibility is that Apple and Genentech teamed up to tune the BLAST bioinformatics tool to use the AltiVec processor on the G4 with impressive results (http://www.apple.com/pr/library/2002/feb/07blast.html).

Any suggestions or comments would be most welcome. Thanks,

-jim
Subject Author Posted

Compiling AFNI to use AltiVec

Jim Eliassen January 31, 2003 09:41AM

Re: Compiling AFNI to use AltiVec

bob cox February 02, 2003 01:55PM

Re: Compiling AFNI to use AltiVec

Jim Eliassen February 03, 2003 10:23AM

Re: Compiling AFNI to use AltiVec

B. Douglas Ward February 03, 2003 11:01AM

Re: Compiling AFNI to use AltiVec

Jim Eliassen February 03, 2003 03:45PM