AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 10, 2006 06:05PM
Hi,
I've taken a few sub-bricks from a bucket data set and loaded them into MatLab using BrikLoad. I've loaded one each of the beta weight volumes and F-stat volumes (the result of 3dDeconvolve). I do some math on the numbers in the volumes in MatLab, and then put them together into a 64x64x32x2 4-D matrix, where the first volume has beta weights (with some math done to them) and then second volume has F-stats (again with some math done to them). I check to see that each of these volumes has values in them, and that these values are in the appropriate range, given the F-stats and beta weights that I originally read in. Then I use WriteBrik to save these to a new fbuc file, which I open up in AFNI to look at the damage I've done.

The problem is, I can't seem to get AFNI to let me see the beta weights. If I do the usual where I set Olay to be the beta's and Thresh to be the F-stats, I see nothing (except the anatomical underlay). If I set Olay to be the F-stats then I see a nice looking statistical map, and I can threshold on it and everything's fine. But with Olay set to the beta-weight volume, I get nothing. I double and triple checked to see that there were indeed non-zero values in there (before saving from MatLab) and there surely are. I'm wondering if maybe there's something I need to do with the Info structure to get AFNI to recognize these. Any ideas on what I might be doing wrong?

Thanks
Subject Author Posted

AFNI to MatLab and back

Aaron Schurger February 10, 2006 06:05PM

Re: AFNI to MatLab and back

Gang Chen February 13, 2006 10:10AM

Re: AFNI to MatLab and back

Aaron Schurger February 14, 2006 03:29PM

Re: AFNI to MatLab and back

Ziad Saad February 14, 2006 04:51PM

Re: AFNI to MatLab and back

Aaron Schurger February 14, 2006 05:02PM

Re: AFNI to MatLab and back

Ziad Saad February 14, 2006 05:47PM