AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 28, 2006 01:03PM
When I run this Deconvolve script, I get the following error message: Unrecognized command line option: 7

the script is below. I have already checked and double-checked all the paths, file names and syntax. I have never seen this error message and don't know what to make of it. Please advise.

SCRIPT BEGINS HERE:

foreach subject (AO-08V)
set om = /space/mindful/4/users/Insight/${subject}/Meditation
set twilo = /space/twilo/3/users/sara-data/Deconvolve/NoC02_Deconvolve
3dDeconvolve \
-input "scaled4+orig.BRIK" \
-nfirst 15 \
-nlast 599 \
-mask "med_mask+orig.BRIK" \
-polort 1 \
-num_stimts 11 \
-stim_file 1 "plrt.N2.para.1D[0]" -stim_label 1 "early" \
-stim_file 2 "plrt.N2.para.1D[1]" -stim_label 2 "middle" \
-stim_file 3 "plrt.N2.para.1D[2]" -stim_label 3 "late" \
-stim_file 4 "plrt.N2.para.1D[3]" -stim_label 4 "numbers" \
-stim_file 5 "plrt.N2.para.1D[4]" -stim_label 5 "fix" \
-stim_file 6 "$om/Deconvolve/med_mc.1D[0]" -stim_base 6 -stim_label "roll" \
-stim_file 7 "$om/Deconvolve/med_mc.1D[1]" -stim_base 7 -stim_label "pitch" \
-stim_file 8 "$om/Deconvolve/med_mc.1D[2]" -stim_base 8 -stim_label "yaw" \
-stim_file 9 "$om/Deconvolve/med_mc.1D[3]" -stim_base 9 -stim_label "ztrans" \
-stim_file 10 "$om/Deconvolve/med_mc.1D[4]" -stim_base 10 -stim_label "x" \
-stim_file 11 "$om/Deconvolve/med_mc.1D[5]" -stim_base 11 -stim_label "y" \
-num_glt 2 \
-glt 1 "glt.late_v.early.mat" -glt_label 1 "late.vs.early" \
-glt 1 "glt.early_v_num.mat" -glt_label 2 "early.vs.nums" \
-tout -fout -bucket NoC02_Dec
adwarp -apar $om/3danat+tlrc -dpar NoC02_Dec+orig
echo "Done ${subject}"
end
Subject Author Posted

Unexplained error message

Michael Treadway March 28, 2006 01:03PM

Re: Unexplained error message

rick reynolds March 28, 2006 01:10PM