I'm having some problems with data acquired from a Siemens Tim Trio scanner. The EPI images are approximately 8cm posterior to the MPRAGE. At first I thought this was due to the EPIs being acquired at an oblique angle, but I've now discoverd the same problem when looking at straight axials.
I used the following to create the EPI BRIKs and MPRAGE...
Dimon -infile_pattern '*dcm' -dicom_org -GERT_Reco -quit
I had to modify the GERT_Reco script so that then number of slices was '40' instead of '1', but other than that I left it alone.
I'll be happy to upload BRIKs or dcm files if that would be helpful. Any help will be greatly appreciated!!
Andrew