AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
December 12, 2008 09:54AM
Hi Gang,

When I ran the 3dTfitter command to generate the seed timeseries at neuronal level, it gives me a 1D file with some ASCII text in the output file. Is there any way to generate the outfile without the text?

Command I used and contents of output file are as follows.

$ 3dTfitter -RHS Seed_test.1D -FALTUNG Gamma_HR.1D Seed_test_Neur.1D 012 -1

$ cat Seed_test_Neur.1D

<AFNI_3D_dataset
# self_idcode = "XYZ_9e5e1fKy37WzZHSd1a7TbQ"
# ni_type = "169*float"
# ni_dimen = "1,1,1"
# ni_delta = "1,1,1"
# ni_origin = "0,0,0"
# ni_axes = "R-L,A-P,I-S"
# >
0.407365 0.160721 0.14544 0.0634425 -0.0186833 -0.11132 -0.0938855 -0.102421 -0.141436 0.02606 0.0676273 -0.0299168 -0.153368 -0.0487189 -0.077693 -0.128724 -0.0594383 -0.013037 0.00938507 -0.0489724 -0.0639509 -0.0848925 -0.0270105 0.0281894 0.0128304 0.0222606 0.0462001 -0.000731375 0.0187071 0.275516 0.247003 0.000425412 0.0171184 0.127507 0.164996 -0.00366821 -0.0946903 -0.00714714 0.225445 0.342165 0.263535 0.327301 0.426602 0.24033 0.0386223 -0.006383 0.118871 0.0790594 -0.0258894 -0.0985618 -0.164511 -0.147806 -0.166965 -0.16659 -0.075168 0.0218275 -0.00664633 -0.0483042 -0.000699322 0.0726963 -0.000167798 0.00164583 0.0434509 0.0360113 0.0300057 0.0469307 0.0325743 -0.109431 -0.114248 0.139168 0.265148 0.0845008 -0.0363604 0.0565683 0.179731 0.1349 0.104124 0.212066 0.248691 0.129484 0.0374917 -0.0162168 -0.0200687 -0.0745736 -0.0807477 -0.00935936 0.0584381 0.0257 -0.00619892 -0.0466088 -0.0899523 0.0342146 0.0847476 0.021362 -0.0287161 -0.007789 -0.0352639 -0.0763877 -0.0294289 0.0305642 0.0626479 0.0985808 0.208615 0.221881 0.117966 -0.0264213 -0.000391507 0.0783108 -0.00520616 -0.121593 -0.0888129 0.056416 0.122925 0.141458 0.215277 0.194248 0.12704 -0.0775596 -0.0950803 0.0393348 0.176409 0.120402 -0.000881886 0.0339629 -0.00934057 -0.099848 -0.284796 -0.258692 -0.0224345 0.136726 0.193207 0.156876 0.0633778 0.0645243 0.0254919 0.129681 0.146123 0.036137 -0.032024 0.040483 0.0913674 -0.0751366 0.0262823 0.15438 0.064875 -0.117238 0.0409917 0.139675 -0.0987563 -0.277899 -0.125984 0.105616 0.136111 -0.0168681 -0.0284663 0.0385224 -0.0332895 -0.0185993 0.0687666 -0.001843 -0.0225684 0.11616 0.22633 0.10008 -0.0459116 0.0798892 0.144004 0.0750879 0.0340581
# </AFNI_3D_dataset>


Thanks,
Srikanth.

Subject Author Posted

3dTfitter

Srikanth December 12, 2008 09:54AM

Re: 3dTfitter

Bob Cox December 12, 2008 10:11AM

Re: 3dTfitter

Srikanth December 12, 2008 10:22AM

Re: 3dTfitter

Brenda Benson January 26, 2009 01:54PM

Re: 3dTfitter

rick reynolds January 26, 2009 02:07PM

Re: 3dTfitter

Brenda Benson January 26, 2009 02:29PM

Re: 3dTfitter

rick reynolds January 26, 2009 02:43PM

Re: 3dTfitter

rick reynolds January 26, 2009 04:24PM

Re: 3dTfitter

rick reynolds January 26, 2009 05:56PM

Re: 3dTfitter

Brenda Benson January 29, 2009 03:59PM