AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 28, 2009 08:25PM
I have an experiment with multiple scan runs, which are automatically concatenated in 3dDeconvolve, in the usual way. Now I have generated baseline+fit time series using 3dSynthesize. I would like to use the AFNI graph viewer to see the raw timeseries with the "ideal" overlaid, so I can check how the fit looks.

Is there a way to have the afni viewer automatically concatenate multiple EPIs as underlay so I can see the full timeseries graph? Or do I have to use 3dTcat to make a whole new huge dataset if I want to see that?

Alternately, is there a way to look at one scan run at a time as the underlay, but tell it to start the "ideal" dataset at the right place to match that run?

Or even more alternately, I'm open to suggestions as to how other people use the available functionality to efficiently review the fit of their GLMs. I don't need to be doing it exactly this way, it's just the first thing that occurred to me.

Thanks all!
-dave
Subject Author Posted

Concatenated underlays?

David Perlman November 28, 2009 08:25PM

Re: Concatenated underlays?

rick reynolds November 29, 2009 01:08PM

Re: Concatenated underlays?

bob cox November 30, 2009 09:20AM

Re: Concatenated underlays?

David Perlman November 30, 2009 06:25PM

Re: Concatenated underlays?

bob cox November 30, 2009 09:19PM