AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Alisha J.
February 13, 2012 09:28PM
Hello afni experts,

I am attempting to run 3dTcorrMap in a linux based supercomputer environment. I have tested this command line on my MacOS X and it worked perfectly fine. However, now that I've moved it to the supercomputer, I keep getting a command that the program has been killed. See below:


bash-3.2$ afni='//nfs/08/osu5470/usr/local/abin'
-bash-3.2$ $afni/3dTcorrMap -input res4d_10000.nii -automask -CorrMap test_corr
++ 3dTcorrMap: AFNI version=AFNI_2011_12_21_1014 (Feb 10 2012) [64-bit]
++ CorrMap, this might take a long while...
++ 48556 voxels survive -automask
+ only 38585 voxels in dataset are non-constant
+ Detrending input dataset with 2 references
+ extracting mask-ed time series
+ normalizing extracted time series
++ Starting long long loop: OpenMP threads=8 537 billion Flops
+ Single loop (1/50) duration: 46.7 secs = 0.78 mins
Remaining (49/50) time est.: 2289 secs = 38.1 mins = 0.64 hrs = 0.026 days
++ Voxel loop: 012Killed


It has been killed at several different points within the voxel loop. Could anyone explain why this is happening? I would be much obliged.

Alisha
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Subject Author Posted

3dTcorrMap Killed

Alisha J. February 13, 2012 09:28PM

Re: 3dTcorrMap Killed

Bob Cox February 14, 2012 06:37AM