Hi,
I'm running to3d -skip_outliers -prefix MPRAGE.nii.gz -session /home/User/data/ -time:zt 160 1 2sec alt+z ./*.dcm on an anatomical data, which nz=160, nt=1 and its TR is 2 sec. Since it is oblique, (but we do not know the oblique angles), I use 3dWarp -deoblique MPRAGE.nii.gz to deoblique it, but opening it in AFNI, it seems it is not being deoblique completely. So, can you please let me know how I can deoblique it completely?
Thanks,