AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Mahshid
April 30, 2012 02:49PM
Hi,

I'm running to3d -skip_outliers -prefix MPRAGE.nii.gz -session /home/User/data/ -time:zt 160 1 2sec alt+z ./*.dcm on an anatomical data, which nz=160, nt=1 and its TR is 2 sec. Since it is oblique, (but we do not know the oblique angles), I use 3dWarp -deoblique MPRAGE.nii.gz to deoblique it, but opening it in AFNI, it seems it is not being deoblique completely. So, can you please let me know how I can deoblique it completely?

Thanks,
Subject Author Posted

Problem in Deobliqueing the data

Mahshid April 30, 2012 02:49PM

Re: Problem in Deobliqueing the data

Daniel Glen April 30, 2012 03:55PM

Re: Problem in Deobliqueing the data

Mahshid April 30, 2012 04:28PM

Re: Problem in Deobliqueing the data

Daniel Glen May 18, 2012 04:50PM