Hi
I used FSL's FLIRT to register a patient's anatomical to std MNI template; I would now like to use the parameters from this transformation in a 3dfractionize command below. How do I write the transformation parameters from fsl into my $Anatfile so I can use it in this command-
3dfractionize -prefix $DataOutPath/Mask.$seed.epi -template $DataOutPath/rs.$sid.pp.mask+orig -input $DataROIPath/Mask.$seed+tlrc.BRIK \
-warp $AnatFile -preserve
-thanks,
Veena.