AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 22, 2012 04:24PM
Hi
I used FSL's FLIRT to register a patient's anatomical to std MNI template; I would now like to use the parameters from this transformation in a 3dfractionize command below. How do I write the transformation parameters from fsl into my $Anatfile so I can use it in this command-
3dfractionize -prefix $DataOutPath/Mask.$seed.epi -template $DataOutPath/rs.$sid.pp.mask+orig -input $DataROIPath/Mask.$seed+tlrc.BRIK \
-warp $AnatFile -preserve

-thanks,
Veena.
Subject Author Posted

Warp dataset doesn't contain a warp transformation

Veena July 22, 2012 04:24PM