Hi All,
I am using to3d to convert dicom file into afni files. The dicom files are PET images with 207 slices per volume from the PET department in Bethesda campus. When I open the converted file, there appears a black belt in the middle of the volume. I tried to run to3d GUI, it seems to3d is able to correctly read the paramters in the dicom header. Since the black belt is not completly dark, I don't think there are missing slices. (I have also tried the conversion in SPM. The images turned out to be OK. So nothing wrong with the dicom files)

I used the code generated from Dimon. I can upload the picture if you have time to take a look.

Any suggestions or comments are appreciated,
Best,

Juen


#!/bin/tcsh

# This script was automatically generated by 'Dimon'.
#
# Please modify the following options for your own evil uses.

set OutlierCheck = '' # use '-skip_outliers' to skip
set OutPrefix = 'OutBrick' # prefix for datasets


to3d -prefix ${OutPrefix}_run_020 \
-time:zt 207 2 0.0sec alt+z \
-@ < dimon.files.run.020