AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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mb
June 24, 2013 06:13PM
I'm running align_epi_anat.py and I get the following error. Not sure what's wrong though? If I type "3dAttribute DELTA 791+orig' on the command line, things are fine. But when it includes the path in the script or something, I get this error? Thanks, mb


#Script is running:
3dAttribute DELTA /Volumes/FMRI/Titan fMRI/791/791+orig
Error: Empty output.
Traceback (most recent call last):
File "/Users/mb/afni/align_epi_anat.py", line 2975, in <module>
if(not (ps.process_input())):
File "/Users/mg/afni/align_epi_anat.py", line 1494, in process_input
min_d = self.min_dim_dset(ps.epi)
File "/Users/mb/afni/align_epi_anat.py", line 1700, in min_dim_dset
min_dx = min([abs(float(com.val(0,i))) for i in range(3)])
TypeError: float() argument must be a string or a number
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Subject Author Posted

align_epi script error

mb June 24, 2013 06:13PM

Re: align_epi script error

Daniel Glen June 25, 2013 10:52AM

Re: align_epi script error

mb June 25, 2013 11:03AM