AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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mb
August 13, 2013 11:42AM
I'm puzzled how -coord_file correctly reads a 1D file? The documentation says to use [1,2,3] in 1D file to specify coordinates after running, for example 3dclust:

i.e.
3dclust -1Dformat -1clip 0.3 5 3000 func+orig'[1]' > out.1D
whereami -coord_file out.1D'[1,2,3]' -tab

but the resulting 1D file includes the following info:

#Volume CM RL CM AP CM IS minRL maxRL minAP maxAP minIS maxIS Mean SEM Max Int MI RL MI AP MI IS
#------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ------- ------- ------- ----- ----- -----
2526 -10.0 -0.8 -1.6 -61.2 43.8 -36.2 38.8 -33.8 18.8 1 0 1 -46.2 -1.2 -33.8

What indices does whereami read in when one specifies [1,2,3] for the uncommented number line?

thanks, mb
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whereami -coord_file

mb August 13, 2013 11:42AM

Re: whereami -coord_file

rick reynolds August 13, 2013 12:10PM

Re: whereami -coord_file

mb August 13, 2013 12:14PM