AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
O.M.
January 17, 2014 12:57PM
Hi AFNI experts,

I've been messing around with afni.proc to compare those results with my results using my fmri preprocessing pipeline and I've been getting some inconsistencies using both pipelines. Is there a way to check for data quality using afni proc instead of relying on visual inspection?

My pipeline combines commands from both AFNI and FSL and follows a standard process: motion & slice-time correction, warping, blurring and scaling. However, for 3ddeconvolve I use dmBLOCK and AM1 for some timing files because some onsets last longer, and afni proc spits out a gama 'GAM' function, but using AM1 because some of my stim files are "married".

I would like to use some commands from afni.proc to check my data using my pipeline

Any suggestions are welcomed

Thanks
Reply Quote
RSS
Subject Author Posted

Data quality using afni proc

O.M. January 17, 2014 12:57PM

Re: Data quality using afni proc

rick reynolds January 18, 2014 10:04PM