Hello Afni Experts,

I am trying to preprocess my resting state data using example # 9 from afni proc py with the addition of Qwarp.

However, I am running into the following error: proc_sub202.Qwarp.Rest1.Pre: No such file or directory.
**error option -blur_size follows unknown arg # 31 (-tlrc_NL_warp)

Below is my script. Any idea of what I am missing?

Thanks so much,

Emily

#!/bin/tcsh
#
#
#

setenv subfolder /media/larson_buffalo/MRI7/KAward
setenv QwarpScripts /media/larson_buffalo/MRI7/KAward/Scripts/Conditioning

set study = KAward


foreach subject (sub202 sub203 sub204 sub205 sub206 sub207 sub208 sub209 sub210 sub212 sub213 sub214 sub216 sub217 sub218 sub219 sub220 sub221 sub222 sub223 sub224 sub225 sub226 sub227 sub228 sub229 sub230 sub231 sub232 sub233 sub234 sub235 sub236 sub237 sub238 sub239 sub240 sub241 sub242 sub243 sub244 sub245 sub248 sub249 sub250 sub251 sub252 sub253 sub254 sub255 sub256)

afni_proc.py \
-subj_id ${subject} \
-script ${QwarpScripts}/proc_${subject}.Qwarp.Rest1.Pre \
-out_dir ${subfolder}/${subject}/${subject}.Qwarp.Rest1.Pre \
-dsets ${subfolder}/${subject}/${subject}.${study}.RestPre+orig.HEAD \
-copy_anat ${subfolder}/${subject}/${subject}.${study}.spgr+orig.HEAD \
-anat_has_skull yes \
-blocks despike tshift align tlrc volreg blur mask regress \
-tlrc_base ${subfolder}/MNI152_T1_1mm_brain.nii.gz \
-tcat_remove_first_trs 3 \
-volreg_align_to first \
-volreg_align_e2a \
-volreg_tlrc_warp \
-tlrc_NL_warp \
-blur_size 4 \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.1 \
-regress_bandpass 0.01 0.1 \
-regress_apply_mot_types demean deriv \
-regress_est_blur_errts \
-no_epi_review

tcsh -xef proc_${subject}.Qwarp.Rest1.Pre|& tee output.proc_${subject}.Qwarp.Rest1.Pre \

end