Hi, I am currently looking at neonate data and trying to align my epi images with my T2 anatomical. I am currently using align_epi_anat.py using crM as the cost function. This worked best compared to lpa, lpc and others. Upon visual inspection (i.e. looking at matching of borders, borders of ventricles), the alignment looks very good. I was wondering if the addedge option can be reliably used to assess alignment between a T2 anatomical image and epi or is it optimized for T1 images and epi.
Thank you.