AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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chriscee
August 07, 2015 07:02PM
Hi all! I I am having some issues with the @ss_review (basic/driver) scripts. It used to run using the tcsh @ss_review_ command, but now I keep getting the following errors (pasted below). I double checked the path and the files are all within the subject folders. Any help/thoughts would be greatly appreciated! Thank you!


[ccapistr@du-hpc results]$ tcsh @epi_review.s1004
** missing data to review (e.g. pb00.s1004.r01.tcat)

[username@du-hpc results]$ ls
@epi_review.s1004 @ss_review_driver
@ss_review_basic @ss_review_driver_commands

[username@du-hpc results]$ tcsh @ss_review_basic

subject ID : s1004
TRs removed (per run) : 2
num stim classes provided : 11
final anatomy dset : anat_final.s1004+tlrc.HEAD
final stats dset : stats.s1004+tlrc.HEAD
3dinfo: Command not found.
final voxel resolution :

motion limit : 1.0
1deval: Command not found.
num TRs above mot limit : 0
average motion (per TR) : 3dTstat: Command not found.
1deval: Command not found.
average censored motion : 3dTstat: Command not found.
1d_tool.py: Command not found.
max motion displacement :
1d_tool.py: Command not found.
max censored displacement :
outlier limit : 0.1
average outlier frac (TR) : 3dTstat: Command not found.
1deval: Command not found.
num TRs above out limit : 0

1d_tool.py: Command not found.
1d_tool.py: Command not found.
num runs found :
num TRs per run :
1d_tool.py: Command not found.
1d_tool.py: Command not found.
1d_tool.py: Command not found.
num TRs per run (applied) :
num TRs per run (censored):
fraction censored per run :
1d_tool.py: Command not found.
rows_cols: Subscript out of range.
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Subject Author Posted

@ss_review scripts issue

chriscee August 07, 2015 07:02PM

Re: @ss_review scripts issue

rick reynolds August 07, 2015 08:44PM