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anish_paradise
September 10, 2015 01:32PM
Hi, I am having trouble executing a 3dMVM command. I went through the help topics and tried adding/deleting slashes, as well as renaming my dataTable to just be a table, however i am still getting the message

Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :
argument is of length zero
Calls: process.MVM.opts
Execution halted

This is my script below:

3dMVM \
-prefix 3dmvm_output_EVRep_09_10_15+tlrc \
-jobs 6 \
-mask TT_MASK.nii.gz \
-bsVars 'Age' \
-wsVars "Type + Mean_Act" \
-wsE2
-qVars 'Age' \
-vVars "Mean_Act" \
-num_glt 11 \
-gltLabel 1 novel -gltCode 1 'Type : 1*novel' \
-gltLabel 2 early_rep -gltCode 2 'Type : 1*early_rep' \
-gltLabel 3 mid_rep -gltCode 3 'Type : 1*mid_rep' \
-gltLabel 4 late_rep -gltCode 4 'Type : 1*late_rep' \
-gltLabel 5 novel-early_rep -gltCode 5 'Type : 1*novel -1*early_rep' \
-gltLabel 6 novel-mid_rep -gltCode 6 'Type : 1*novel -1*mid_rep' \
-gltLabel 7 novel-late_rep -gltCode 7 'Type : 1*novel -1*late_rep' \
-gltLabel 8 early_rep-mid_rep -gltCode 8 'Type : 1*early_rep -1*mid_rep' \
-gltLabel 9 early_rep-late_rep -gltCode 9 'Type : 1*early_rep -1*late_rep' \
-gltLabel 10 mid_rep-late_rep -gltCode 10 'Type : 1*mid_rep -1*late_rep' \
-gltLabel 11 novel-all_rep -gltCode 11 'Type : 3*novel -1*early_rep -1*mid_rep -1*late_rep' \
-dataTable @table.txt

and this is my data table (i included a few subjects for the different covariates just as a sample)

Subj Age Type Mean_Act Input_File
sn3632 14.97 novel /zappa/anish/EVRep_stuff/nifti/sn3632/sn3632_EVRep_outliers_stand_anal.results/stats.sn3632_REML+tlrc.HEAD[46] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3632_allnovelwords_masked+tlrc.HEAD

sn3690 14.94 novel /zappa/anish/EVRep_stuff/nifti/sn3690/sn3690_EVRep_outliers_stand_anal.results/stats.sn3690_REML+tlrc.HEAD[46] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3690_allnovelwords_masked+tlrc.HEAD

sn3709 13.9 novel /zappa/anish/EVRep_stuff/nifti/sn3709/sn3709_EVRep_outliers_stand_anal.results/stats.sn3709_REML+tlrc.HEAD[46] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3709_allnovelwords_masked+tlrc.HEAD

sn3582 13.99 early_rep /zappa/anish/EVRep_stuff/nifti/sn3582/sn3582_EVRep_outliers_stand_anal.results/stats.sn3582_REML+tlrc.HEAD[28] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3582_early_rep_c1_c2_masked+tlrc.HEAD

sn3632 14.97 early_rep /zappa/anish/EVRep_stuff/nifti/sn3632/sn3632_EVRep_outliers_stand_anal.results/stats.sn3632_REML+tlrc.HEAD[28] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3632_early_rep_c1_c2_masked+tlrc.HEAD

sn3690 14.94 early_rep /zappa/anish/EVRep_stuff/nifti/sn3690/sn3690_EVRep_outliers_stand_anal.results/stats.sn3690_REML+tlrc.HEAD[28] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3690_early_rep_c1_c2_masked+tlrc.HEAD

sn3709 13.9 early_rep /zappa/anish/EVRep_stuff/nifti/sn3709/sn3709_EVRep_outliers_stand_anal.results/stats.sn3709_REML+tlrc.HEAD[28] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3709_early_rep_c1_c2_masked+tlrc.HEAD

sn3582 13.99 mid_rep /zappa/anish/EVRep_stuff/nifti/sn3582/sn3582_EVRep_outliers_stand_anal.results/stats.sn3582_REML+tlrc.HEAD[31] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3582_mid_rep_c3_c4_masked+tlrc.HEAD

sn3632 14.97 mid_rep /zappa/anish/EVRep_stuff/nifti/sn3632/sn3632_EVRep_outliers_stand_anal.results/stats.sn3632_REML+tlrc.HEAD[31] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3632_mid_rep_c3_c4_masked+tlrc.HEAD

sn3690 14.94 mid_rep /zappa/anish/EVRep_stuff/nifti/sn3690/sn3690_EVRep_outliers_stand_anal.results/stats.sn3690_REML+tlrc.HEAD[31] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3690_mid_rep_c3_c4_masked+tlrc.HEAD

sn2739 9.26 late_rep /zappa/anish/EVRep_stuff/nifti/sn2739/sn2739_EVRep_outliers_stand_anal.results/stats.sn2739_REML+tlrc.HEAD[34] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn2739_late_rep_c5_c6_masked+tlrc.HEAD

sn2983 16.76 late_rep /zappa/anish/EVRep_stuff/nifti/sn2983/sn2983_EVRep_outliers_stand_anal.results/stats.sn2983_REML+tlrc.HEAD[34] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn2983_late_rep_c5_c6_masked+tlrc.HEAD

sn3190 11.62 late_rep /zappa/anish/EVRep_stuff/nifti/sn3190/sn3190_EVRep_outliers_stand_anal.results/stats.sn3190_REML+tlrc.HEAD[34] /zappa/anish/EVRep_stuff/nifti/Beta_outliers/Outlier_Removal/nzSD_sn3190_late_rep_c5_c6_masked+tlrc.HEAD
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Subject Author Posted

3dMVM error message

anish_paradise September 10, 2015 01:32PM

Re: 3dMVM error message

Peter Molfese September 10, 2015 02:46PM

Re: 3dMVM error message

anish_paradise September 10, 2015 03:53PM

Re: 3dMVM error message

gang September 10, 2015 04:02PM

Re: 3dMVM error message

anish_paradise September 10, 2015 06:32PM

Re: 3dMVM error message

gang September 10, 2015 08:49PM

Re: 3dMVM error message

anish_paradise September 11, 2015 11:39AM

Re: 3dMVM error message

anish_paradise September 15, 2015 02:55PM

Re: 3dMVM error message

gang September 15, 2015 05:34PM

Re: 3dMVM error message

anish_paradise September 15, 2015 07:21PM