AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Ali_Ghazizadeh
April 07, 2016 10:22AM
I am using a line like this

align_epi_anat.py -anat anat+orig -epi epi+orig -epi_base 5 -volreg on -epi_strip None -anat_has_skull no
-tshift_opts -tpattern alt+z -tzero 0 -quintic -save_tsh -save_vr

when I do dry_run I see the command for time shift correction and if I run that line myself things are corrected but when I run the align_epi in the echo it says:

#++ Can not do time shifting of slices. Data is already time shifted
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align_epi_anat.py not able to time shift correct

Ali_Ghazizadeh April 07, 2016 10:22AM

Re: align_epi_anat.py not able to time shift correct

Daniel Glen April 07, 2016 03:42PM