AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 03, 2016 02:38PM
Trying to use 3dMVM to show the effect of a covariate (symptom severity) on a within subject factor (3 levels). Unfortunately I can't figure out how to set up the model and test for this effect. My best guess is pasted below but it returns the error:

** Error:
Failed at GLT No. 1! Make sure that the model or GLT specification syntax is correct.

I can't for the life of me figure out where the syntax error is. Any help would be greatly appreciated.


3dMVM -prefix temp -jobs 20 \
-bsVars 1 \
-wsVars 'cond' \
-qVars 'symsev' \
-num_glt 3 \
-wsE2 \
-gltLabel 1 cnf.by.sym -gltCode 1 'cond : 1*cnf symsev :' \
-gltLabel 2 avd.by.sym -gltCode 2 'cond : 1*avd symsev :' \
-gltLabel 3 app.by.sym -gltCode 3 'cond : 1*app symsev :' \
-dataTable \
Subj cond symsev InputFile \
501003 app 12 $aysPath/501003/subAverage/stats.501003+tlrc'[1]' \
501004 app 14 $aysPath/501004/subAverage/stats.501004+tlrc'[1]' \
501005 app 18 $aysPath/501005/subAverage/stats.501005+tlrc'[1]' \
501006 app 10 $aysPath/501006/subAverage/stats.501006+tlrc'[1]' \
501007 app 11 $aysPath/501007/subAverage/stats.501007+tlrc'[1]' \
501003 avd 12 $aysPath/501003/subAverage/stats.501003+tlrc'[2]' \
501004 avd 14 $aysPath/501004/subAverage/stats.501004+tlrc'[2]' \
501005 avd 18 $aysPath/501005/subAverage/stats.501005+tlrc'[2]' \
501006 avd 10 $aysPath/501006/subAverage/stats.501006+tlrc'[2]' \
501007 avd 11 $aysPath/501007/subAverage/stats.501007+tlrc'[2]' \
501003 cnf 12 $aysPath/501003/subAverage/stats.501003+tlrc'[3]' \
501004 cnf 14 $aysPath/501004/subAverage/stats.501004+tlrc'[3]' \
501005 cnf 18 $aysPath/501005/subAverage/stats.501005+tlrc'[3]' \
501006 cnf 10 $aysPath/501006/subAverage/stats.501006+tlrc'[3]' \
501007 cnf 11 $aysPath/501007/subAverage/stats.501007+tlrc'[3]' \
Subject Author Posted

3dMVM 3x1 ws Factor and Covariate

sgreen February 03, 2016 02:38PM

Re: 3dMVM 3x1 ws Factor and Covariate

gang February 04, 2016 10:16AM

Re: 3dMVM 3x1 ws Factor and Covariate

sgreen February 04, 2016 11:54AM

Re: 3dMVM 3x1 ws Factor and Covariate

gang February 04, 2016 01:58PM

Re: 3dMVM 3x1 ws Factor and Covariate

aclynn11 July 07, 2016 05:01PM

Re: 3dMVM 3x1 ws Factor and Covariate

gang July 08, 2016 08:57AM

Re: 3dMVM 3x1 ws Factor and Covariate

aclynn11 July 08, 2016 10:18AM

Re: 3dMVM 3x1 ws Factor and Covariate

gang July 08, 2016 12:56PM