AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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skeedy
August 03, 2016 10:42AM
Hi,

I am getting an error in trying to run 3dMVM that I cannot understand. I am pretty sure I have specified the variables correctly, particularly that "Drug" is indeed a within subject variable. Help?

The error message is:
Incorrect level coding in variable Drug : PB

The script (truncated):

3dMVM -prefix macs.prelim3 -jobs 64 \
-bsVars "Sex*Paired_BG" \
-wsVars "Time*Drug" \
-qVars 'Age' \
-num_glt 2 \
-gltLabel 1 'MAvPB_A' -gltCode 1 'Drug : 1*MA -1*PB Time : 1*A' \
-gltLabel 2 'MAvPB_B' -gltCode 2 'Drug : 1*MA -1*PB Time : 1*B' \
-dataTable \
Subj Age Sex Paired_BG Drug Time InputFile \
MACS002 19 F O MA A ../subject_results/group.OMA/subj.S002/S002.results/stats.S002+tlrc'[67]' \
MACS002 19 F O MA B ../subject_results/group.OMA/subj.S002/S002.results/stats.S002+tlrc'[70]' \
MACS002 19 F O PB A ../subject_results/group.OMA/subj.S002/S002.results/stats.S002+tlrc'[73]' \
MACS002 19 F O PB B ../subject_results/group.OMA/subj.S002/S002.results/stats.S002+tlrc'[76]' \
MACS004 23 F F MA A ../subject_results/group.FMA/subj.S004/S004.results/stats.S004+tlrc'[67]' \
MACS004 23 F F MA B ../subject_results/group.FMA/subj.S004/S004.results/stats.S004+tlrc'[70]' \
MACS004 23 F F PB A ../subject_results/group.FMA/subj.S004/S004.results/stats.S004+tlrc'[73]' \
MACS004 23 F F PB B ../subject_results/group.FMA/subj.S004/S004.results/stats.S004+tlrc'[76]' \
MACS005 20 M O MA A ../subject_results/group.OMA/subj.S005/S005.results/stats.S005+tlrc'[67]' \
MACS005 20 M O MA B ../subject_results/group.OMA/subj.S005/S005.results/stats.S005+tlrc'[70]' \
MACS005 20 M O PB A ../subject_results/group.OMA/subj.S005/S005.results/stats.S005+tlrc'[73]' \
MACS005 20 M O PB B ../subject_results/group.OMA/subj.S005/S005.results/stats.S005+tlrc'[76]' \
,,,


thanks,
sarah
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Subject Author Posted

3dmvm "incorrect level coding"

skeedy August 03, 2016 10:42AM

Re: 3dmvm "incorrect level coding"

gang August 04, 2016 11:06AM

Re: 3dmvm "incorrect level coding"

skeedy August 10, 2016 03:25PM