Hi,
I'm trying to rerun some RSFC analysis and in doing so also trying to avoid rerunning nonlinear warping given how long it takes.
I'm running the following command from linux_openmp_64: Aug 19 2016 (Version AFNI_16.2.11)
afni_proc.py -subj_id 106_A -script \
106_A.afniRsfcPreprocess.noanaticor.NL.csh -out_dir \
afniRsfcPreprocessed.noanaticor.NL -blocks despike tshift align tlrc \
volreg mask blur regress -copy_anat \
/data/sanDiego/machLearnT1Analysis/data/106_A/106_A.anat.zp+orig.HEAD \
-dsets \
/data/sanDiego/machLearnT1Analysis/data/106_A/106_A.resting.zp+orig.HEAD \
-tlrc_base MNI_caez_N27+tlrc -volreg_align_to first -volreg_tlrc_warp \
-align_opts_aea -cost lpc -tlrc_NL_warp -tlrc_NL_warped_dsets \
/data/sanDiego/machLearnT1Analysis/data/106_A/afniRsfcPreprocessed.NL/106_A.anat.zp_al_keep+tlrc.HEAD \
/data/sanDiego/machLearnT1Analysis/data/106_A/afniRsfcPreprocessed.NL/anat.un.aff.Xat.1D \
/data/sanDiego/machLearnT1Analysis/data/106_A/afniRsfcPreprocessed.NL/anat.un.aff.qw_WARP.nii \
-blur_size 7 -blur_to_fwhm -blur_opts_B2FW '-ACF -rate 0.2 -temper' \
-mask_apply group -mask_segment_anat yes -regress_censor_first_trs 3 \
-mask_segment_erode yes -regress_ROI WMe -regress_bandpass 0.01 0.1 \
-regress_apply_mot_types demean -regress_censor_motion 0.25 \
-regress_run_clustsim no -regress_est_blur_epits -regress_est_blur_errts
but am getting the following error
-- tcat: reps is now 256
++ updating polort to 4, from run len 512.0 s
-- importing NL-warp datasets
-- volreg: using base dset vr_base+orig
++ volreg: applying volreg/tlrc xforms to isotropic 3 mm tlrc voxels
-- applying anat warps to 1 dataset(s): 106_A.anat.zp
** ERROR: cannot apply group mask
** script creation failure for block 'mask'
-- will apply motion types: demean
** regress_ROI: missing ROI dset for 'WMe'
** script creation failure for block 'regress'
Is it not possible to supply previously computed nonlinear warps and apply a group mask?
Thanks,
Colm.
Edited 1 time(s). Last edit at 08/25/2016 02:44PM by Colm Connolly.