AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 08, 2016 09:33AM
Good morning,
I have been having afni crash on me at various stages of viewing and attempting to save images since late yesterday evening. I have attached the terminal output and crash log from the most recent failure below. Any ideas you have on getting this fixed would be much appreciated.
Thanks!
Kate


Precompiled binary linux_xorg7_64: Jan 27 2016 (Version AFNI_16.0.01)

Thanks go to JA Bobholz for inspiration

Initializing: X11.++ AFNI is detached from terminal.
[krasmussn@ipl5 preop]$
++++++++ IMAGE SAVE SETUP WARNINGS ++++++++
++ Can't find program mpeg_encode for Save to MPEG-1
++ Can't find program gifsicle OR whirlgif for Save to Animated GIF
++ To disable these warnings, set environment
++ variable AFNI_IMSAVE_WARNINGS to 'NO'.
+++++++++++++++++++++++++++++++++++++++++++
. Widgets...... Input files:
session # 1 = fromCLI ==> 2 datasets
dataset count = 2
Time series = 0 files read
NLfit & NLerr= Optimizer (AFNI_NLFIM_METHOD) is SIMPLEX
NLfit & NLerr= Found 28 models
Plugins = 52 libraries read

++ WARNING: ~/.afni.log is now 43,674,857 (44 million [mega]) bytes long!
+ (Is that you, Kevin?)

++ NOTE: This version of AFNI was built Jan 27 2016 ++
++ NOTE: 'Define Markers' is hidden: right-click 'DataDir' to see it
++ NOTE: you may want to consider creating a '.afnirc' file in your home
directory, to control AFNI's setup. For more details, see
[afni.nimh.nih.gov]
++ Writing one 229x193 image to file test.ppm
*+ WARNING: No whereami program in Unix path ==> no WamI button in Clusterize!

Fatal Signal 11 (SIGSEGV) received
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_16.0.01 Compile date = Jan 27 2016
** [[Precompiled binary linux_xorg7_64: Jan 27 2016]]
** Program Death **

*********------ CRASH LOG ------------------------------***********
Fatal Signal 11 (SIGSEGV) received
.......... recent internal history .........................................
++++++drive_MCW_grapher [6]: {ENTRY (file=afni_graph.c line=4829) from AFNI_set_viewpoint
------drive_MCW_grapher [6]: EXIT} (file=afni_graph.c line=4831) to AFNI_set_viewpoint
++++++drive_MCW_grapher [6]: {ENTRY (file=afni_graph.c line=4829) from AFNI_set_viewpoint
------drive_MCW_grapher [6]: EXIT} (file=afni_graph.c line=4831) to AFNI_set_viewpoint
++++++drive_MCW_grapher [6]: {ENTRY (file=afni_graph.c line=4829) from AFNI_set_viewpoint
------drive_MCW_grapher [6]: EXIT} (file=afni_graph.c line=4831) to AFNI_set_viewpoint
++++++AFNI_process_redisplay [6]: {ENTRY (file=afni_receive.c line=645) from AFNI_set_viewpoint
------AFNI_process_redisplay [6]: EXIT} (file=afni_receive.c line=669) to AFNI_set_viewpoint
-----AFNI_set_viewpoint [5]: EXIT} (file=afni.c line=7552) to AFNI_crosshair_visible_CB
+++++AFNI_quit_CB [5]: {ENTRY (file=afni.c line=2624) from AFNI_crosshair_visible_CB
-----AFNI_quit_CB [5]: EXIT} (file=afni.c line=2639) to AFNI_crosshair_visible_CB
----AFNI_crosshair_visible_CB [4]: EXIT} (file=afni.c line=6176) to AVOPT_press_CB
---AVOPT_press_CB [3]: EXIT} (file=bbox.c line=1793) to AFNI:main
+++ISQ_drawing_EV [3]: {ENTRY (file=imseq.c line=5594) from AFNI:main
++++ISQ_show_image [4]: {ENTRY (file=imseq.c line=5267) from ISQ_drawing_EV
ISQ_show_image -- putting sized_xim to screen
+++++ISQ_draw_winfo [5]: {ENTRY (file=imseq.c line=5374) from ISQ_show_image
-----ISQ_draw_winfo [5]: EXIT} (file=imseq.c line=5465) to ISQ_show_image
----ISQ_show_image [4]: EXIT} (file=imseq.c line=5361) to ISQ_drawing_EV
---ISQ_drawing_EV [3]: EXIT} (file=imseq.c line=6153) to AFNI:main
+++ISQ_drawing_EV [3]: {ENTRY (file=imseq.c line=5594) from AFNI:main
---ISQ_drawing_EV [3]: EXIT} (file=imseq.c line=6153) to AFNI:main
+++ISQ_drawing_EV [3]: {ENTRY (file=imseq.c line=5594) from AFNI:main
---ISQ_drawing_EV [3]: EXIT} (file=imseq.c line=6153) to AFNI:main
+++ISQ_drawing_EV [3]: {ENTRY (file=imseq.c line=5594) from AFNI:main
---ISQ_drawing_EV [3]: EXIT} (file=imseq.c line=6153) to AFNI:main
+++ISQ_drawing_EV [3]: {ENTRY (file=imseq.c line=5594) from AFNI:main
++++ISQ_show_bar [4]: {ENTRY (file=imseq.c line=5540) from ISQ_drawing_EV
ISQ_show_bar -- putting sized_xbar to screen
----ISQ_show_bar [4]: EXIT} (file=imseq.c line=5579) to ISQ_drawing_EV
---ISQ_drawing_EV [3]: EXIT} (file=imseq.c line=6153) to AFNI:main
............................................................................
AFNI:main
** AFNI compile date = Jan 27 2016
** [[Precompiled binary linux_xorg7_64: Jan 27 2016]]
** Program Crash **
Subject Author Posted

repeated afni crash

krasmussn September 08, 2016 09:33AM

Re: repeated afni crash

Daniel Glen September 08, 2016 12:05PM

Re: repeated afni crash

krasmussn September 08, 2016 12:18PM

Re: repeated afni crash

Daniel Glen September 08, 2016 12:28PM

Re: repeated afni crash

krasmussn September 09, 2016 09:27AM

Re: repeated afni crash

Bob Cox September 09, 2016 09:31AM

Re: repeated afni crash

krasmussn September 09, 2016 10:20AM