AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 25, 2016 05:56PM
I am getting output from t tests I specify in 3dMVM that I expect to be different from each other, but they are not, and I could use some help understanding why. There are a few variables in my model, but right now I would like to get a t test result for the within subject variable Drug for each sex separately. With the following 3dMVM script, the output from each glt line that I think should give me those separate tests (glt 2 and 3) yields datasets that are identical. I am not sure what i am doing wrong. Help?


3dMVM_rcc -prefix macs.sex -jobs 64 \
-bsVars "Sex+Paired_BG" \
-wsVars "Time*Drug" \
-qVars 'Age' \
-num_glt 3 \
-gltLabel 1 'Sex' -gltCode 1 'Sex : 1*G -1*B' \
-gltLabel 2 'MaleXPairedBG' -gltCode 2 'Paired_BG : 1*O -1*F Sex : 1*B ' \
-gltLabel 3 'FemaleXPairedBG' -gltCode 3 'Paired_BG : 1*O -1*F Sex : 1*G ' \
-dataTable \
Subj Age Sex Paired_BG Drug Time Like_MA InputFile \
MACS002 19 G O MA A 83.5 stats.S002+tlrc'[67]' \
MACS002 19 G O MA B 83.5 stats.S002+tlrc'[70]' \
MACS002 19 G O PB A 83.5 stats.S002+tlrc'[73]' \
MACS002 19 G O PB B 83.5 stats.S002+tlrc'[76]' \
MACS004 23 G F MA A 27 stats.S004+tlrc'[67]' \
MACS004 23 G F MA B 27 stats.S004+tlrc'[70]' \
MACS004 23 G F PB A 27 stats.S004+tlrc'[73]' \
MACS004 23 G F PB B 27 stats.S004+tlrc'[76]' \
MACS005 20 B O MA A 85.5 stats.S005+tlrc'[67]' \
MACS005 20 B O MA B 85.5 stats.S005+tlrc'[70]' \
MACS005 20 B O PB A 85.5 stats.S005+tlrc'[73]' \
MACS005 20 B O PB B 85.5 stats.S005+tlrc'[76]' \
...
Subject Author Posted

gltCode 3dMVM

skeedy October 25, 2016 05:56PM

Re: gltCode 3dMVM

gang October 25, 2016 09:07PM