AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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elsewein
December 06, 2016 11:50PM
Hello,

I'm trying to run uber_subject.py on my mac (10.12.1 sierra), and I'm having error message as below.
**** failed to import PyQt4.QtGui ****

PyQt4 must be installed to run the uber_subject.py GUI
--> see the output of: uber_subject.py -help_install


However, I have already installed pyqt using "brew install pyqt5"
Below are messages after running " afni_system_check.py -check_all". Your help would be much appreciated!

Thanks,
Charlie

-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 16.1.0
version: Darwin Kernel Version 16.1.0: Thu Oct 13 21:26:57 PDT 2016; root:xnu-3789.21.3~60/RELEASE_X86_64
distribution: 10.12.1 x86_64
number of CPUs: 4
apparent login shell: tcsh
shell RC file: .cshrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /Users/jglab/abin/afni
afni version : Precompiled binary macosx_10.7_Intel_64: Nov 21 2016
AFNI_version.txt : AFNI_16.3.12, macosx_10.7_Intel_64, Nov 21 2016
which python : /usr/bin/python
python version : 2.7.10

which R : /usr/local/bin/R
R version : R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch"
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/Users/jglab/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.3/Resources/bin/R)
python : 1 (/usr/bin/python)

testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : success

checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
** python module not found: PyQt4

-------------------------------- env vars --------------------------------
PATH = /sw/bin:/usr/bin:/usr/bin:/sw/bin:/usr/bin:/usr/local/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/jglab/abin

PYTHONPATH = /usr/local/lib/python2.7/site-packages

R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/afni
top history: ... 2016 [rickr]: updated proc scripts and PPI examples
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
data dir : missing afni_handouts
atlas : found TT_N27+tlrc under /Users/jglab/abin

------------------------------ OS specific -------------------------------
which brew : /usr/local/bin/brew
brew version : Homebrew 1.1.2

++ found valid link /usr/local/lib/libgomp.1.dylib
to /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/libgomp.1.dylib
++ found valid link /usr/local/lib/libglib-2.0.dylib
to ../Cellar/glib/2.50.2/lib/libglib-2.0.dylib
++ found 1 dylib files under '/opt/X11/lib/flat_namespace'
-- found 'libXt' dylib files, e.g. /opt/X11/lib/flat_namespace/libXt.6.dylib
** env var DYLD_LIBRARY_PATH is not set to contain /opt/X11/lib/flat_namespace
(so afni and suma may fail)

============================ summary comments ============================
* insufficient data for AFNI bootcamp
* consider running: brew install pyqt
* cannot tell if DYLD_LIBRARY_PATH includes /opt/X11/lib/flat_namespace



Edited 1 time(s). Last edit at 12/06/2016 11:50PM by elsewein.
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Error from running uber_subject.py

elsewein December 06, 2016 11:50PM