AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 11, 2013 02:43PM
Hi,

Everytime I run the script, I get this error message: FATAL ERROR: Can't read file 'PDL_052_1.spgr_al_junk_mat.aff12.1D'

here is my afni_proc.py
-----------------------------------------------------------------------------------------------------------------------
afni_proc.py -subj_id $sub \
-script $scrpt_file -scr_overwrite -out_dir $out_dir \
-blocks tshift align volreg mask scale regress \
-copy_anat $anat_file \
-tcat_remove_first_trs $TR \
-tshift_opts_ts -tpattern $pattern \
-dsets \
$same_file \
$diff_file \
-align_opts_aea -cost $costopt \
-volreg_align_to last \
-volreg_align_e2a \
-regress_stim_times \
$stim_dir/times_same_vis.1D \
$stim_dir/times_same_nv.1D \
$stim_dir/times_diff_vis.1D \
$stim_dir/times_diff_nv.1D \
-test_stim_files yes \
-regress_stim_labels \
same_vis same_nv \
diff_vis diff_nv \
-regress_basis_multi \
'TENTzero(0,40,17)' \
-regress_censor_motion 1.0 \
-regress_opts_3dD \
-tout \
-regress_make_ideal_sum sum_ideal.1D
Subject Author Posted

FATAL ERROR: Can't read file '**.spgr_al_junk_mat.aff12.1D'

pshuk December 11, 2013 02:43PM

Re: FATAL ERROR: Can't read file '**.spgr_al_junk_mat.aff12.1D'

Peter Molfese December 11, 2013 11:06PM

Re: FATAL ERROR: Can't read file '**.spgr_al_junk_mat.aff12.1D'

blueberriesforsal February 15, 2017 12:07PM

Re: FATAL ERROR: Can't read file '**.spgr_al_junk_mat.aff12.1D'

Peter Molfese February 15, 2017 12:11PM